Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS31031
         (788 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC222.15 |meu13|SPAC821.01|Tat binding protein 1|Schizosacchar...    29   1.0  
SPCC306.06c |||ER membrane protein, BIG1 family |Schizosaccharom...    28   1.8  
SPBC106.11c |plg7||phospholipase A2 |Schizosaccharomyces pombe|c...    27   2.3  
SPCC162.10 |ppk33||serine/threonine protein kinase Ppk33 |Schizo...    26   5.4  
SPBC685.03 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    25   9.4  
SPBC83.10 |||conserved eukaryotic protein|Schizosaccharomyces po...    25   9.4  

>SPAC222.15 |meu13|SPAC821.01|Tat binding protein
           1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 216

 Score = 28.7 bits (61), Expect = 1.0
 Identities = 14/58 (24%), Positives = 27/58 (46%)
 Frame = +1

Query: 484 DQLRHLASLHGKIYVFEEEWVTVLRDRNVREPGYPKRFHELFIGLPSSIKVIRTIYEK 657
           +QLR    +HGK+Y  +  +V +  D     P       +    L   + V++T+Y++
Sbjct: 55  EQLRDTGLIHGKLYGKQSVFVCLQDDLAAATPEELAEMEKQIQELKDEVSVVKTLYKE 112


>SPCC306.06c |||ER membrane protein, BIG1 family
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 311

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 12/38 (31%), Positives = 21/38 (55%)
 Frame = -3

Query: 588 RVPGLSDVSITKNCDPLFFEHVYLAV*TCKVS*LVMHR 475
           ++P  SD S    C  +FF+    A+ TC  + L++H+
Sbjct: 32  KLPKSSDDSSISTCPMMFFDAAIEALSTCNTATLIIHQ 69


>SPBC106.11c |plg7||phospholipase A2 |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 438

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = +2

Query: 263 MSHSNVKSSVMYPYYQLPVDKLHV 334
           M H+  K S++Y  + LPV +LH+
Sbjct: 279 MFHTEFKCSILYDIWMLPVRQLHL 302


>SPCC162.10 |ppk33||serine/threonine protein kinase Ppk33
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 338

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 16/52 (30%), Positives = 29/52 (55%)
 Frame = +2

Query: 410 VGSSQAPRFTKTDSEEFDDAPDLCMTNYDTLQVYTARYTCSKKSGSQFFVIE 565
           +G+S + +  K D E F+D P+   TN++++  +  R    K S S  FV++
Sbjct: 1   MGNSNS-KSVKNDKENFED-PNA--TNFESVSQFKIRNVIGKGSWSTVFVVK 48


>SPBC685.03 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 452

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 10/23 (43%), Positives = 18/23 (78%)
 Frame = +2

Query: 605 FSLVSRPASKLYGPSMRNTIGTL 673
           FSLVS   + +YGPS ++++G++
Sbjct: 68  FSLVSPGWASIYGPSGQSSVGSV 90


>SPBC83.10 |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 189

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = +2

Query: 269 HSNVKSSVMYPYYQLPVDK 325
           H  +  S++YPYY  P +K
Sbjct: 92  HIIINESIVYPYYTSPAEK 110


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,279,296
Number of Sequences: 5004
Number of extensions: 66811
Number of successful extensions: 205
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 197
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 205
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 383374054
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)