Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS31031
(788 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_08_0900 - 21436508-21437521 68 7e-12
06_01_0940 + 7235801-7236916 66 4e-11
02_05_0697 - 30999644-31000762 63 2e-10
10_08_0901 - 21443224-21444085,21444804-21444998,21445189-214452... 60 3e-09
06_02_0148 - 12280794-12280962,12281102-12281210,12281283-122813... 30 2.4
12_02_1061 - 25756366-25757567,25758692-25758797 29 3.2
06_01_0024 + 233101-233189,233259-233340,233430-233493,233636-23... 28 7.4
>10_08_0900 - 21436508-21437521
Length = 337
Score = 68.1 bits (159), Expect = 7e-12
Identities = 34/76 (44%), Positives = 41/76 (53%)
Frame = +3
Query: 30 DEGKADIQVYFASGNHGDGFPFDGPGRVVAHAFPPPLGDIHFDDDETWGVXXXXXXXXXX 209
D ADI+V F +GNHGDG PFDGP ++ HAF P G +H D E W V
Sbjct: 183 DYEAADIKVGFYAGNHGDGVPFDGPLGILGHAFSPKNGRLHLDASEHWAVDFDVDATASA 242
Query: 210 XXXXFFAVAVHEIGHL 257
+VA HEIGH+
Sbjct: 243 IDLE--SVATHEIGHV 256
>06_01_0940 + 7235801-7236916
Length = 371
Score = 65.7 bits (153), Expect = 4e-11
Identities = 34/83 (40%), Positives = 42/83 (50%), Gaps = 1/83 (1%)
Frame = +3
Query: 12 LHFTKL-DEGKADIQVYFASGNHGDGFPFDGPGRVVAHAFPPPLGDIHFDDDETWGVXXX 188
L+FT+ ADI + F G+HGDG FDGP +AHAF P G +H D E W
Sbjct: 201 LNFTEAASAADADITIGFYGGDHGDGEAFDGPLGTLAHAFSPTNGRLHLDASEAWVAGGD 260
Query: 189 XXXXXXXXXXXFFAVAVHEIGHL 257
+VAVHEIGH+
Sbjct: 261 VTRASSNAAVDLESVAVHEIGHI 283
>02_05_0697 - 30999644-31000762
Length = 372
Score = 63.3 bits (147), Expect = 2e-10
Identities = 36/84 (42%), Positives = 42/84 (50%), Gaps = 2/84 (2%)
Frame = +3
Query: 12 LHFTKLDEGK-ADIQVYFASGNHGDGFPFDGPGRVVAHAFPPPLGDIHFDDDETW-GVXX 185
L FT++ ADI + F SG+HGDG FDGP +AHAF P G H D E W
Sbjct: 201 LQFTEVSSASNADITIGFYSGDHGDGEAFDGPLGTLAHAFSPTDGRFHLDAAEAWVASGD 260
Query: 186 XXXXXXXXXXXXFFAVAVHEIGHL 257
+VAVHEIGHL
Sbjct: 261 VSTSSSFGTAVDLESVAVHEIGHL 284
Score = 33.5 bits (73), Expect = 0.20
Identities = 16/36 (44%), Positives = 22/36 (61%), Gaps = 2/36 (5%)
Frame = +2
Query: 263 MSHSNVKSSVMYPYYQLPVDK--LHVDDILGMQELY 364
+ HS+V S+MYP + K L DD+LG+Q LY
Sbjct: 287 LGHSSVPDSIMYPTIRTGTRKVDLESDDVLGIQSLY 322
>10_08_0901 -
21443224-21444085,21444804-21444998,21445189-21445259,
21446293-21447094,21447687-21447723,21448270-21449023
Length = 906
Score = 59.7 bits (138), Expect = 3e-09
Identities = 33/73 (45%), Positives = 38/73 (52%), Gaps = 1/73 (1%)
Frame = +3
Query: 39 KADIQV-YFASGNHGDGFPFDGPGRVVAHAFPPPLGDIHFDDDETWGVXXXXXXXXXXXX 215
+ADI+V ++ +G HGDG PFDGP V AHA P G I FD E W V
Sbjct: 116 EADIRVGFYGAGEHGDGHPFDGPLNVYAHATGPEDGRIDFDAAERWAVDLAADASPAAVD 175
Query: 216 XXFFAVAVHEIGH 254
VA HEIGH
Sbjct: 176 LE--TVATHEIGH 186
Score = 35.9 bits (79), Expect = 0.037
Identities = 19/36 (52%), Positives = 23/36 (63%), Gaps = 2/36 (5%)
Frame = +2
Query: 263 MSHSNVKSSVMYPYYQLPVDK--LHVDDILGMQELY 364
+ HS +SSVMYPY K L VDD+ G+QELY
Sbjct: 190 LDHSTSESSVMYPYVGTRERKVRLTVDDVEGIQELY 225
Score = 33.1 bits (72), Expect = 0.26
Identities = 15/36 (41%), Positives = 24/36 (66%), Gaps = 2/36 (5%)
Frame = +2
Query: 263 MSHSNVKSSVMYPYYQLPVDKLHV--DDILGMQELY 364
+ HS+ +SS+MYP+ K+ + DD+ G+QELY
Sbjct: 450 LDHSSSRSSMMYPFISCRERKVRLTTDDVHGIQELY 485
Score = 32.7 bits (71), Expect = 0.34
Identities = 16/34 (47%), Positives = 24/34 (70%)
Frame = +2
Query: 263 MSHSNVKSSVMYPYYQLPVDKLHVDDILGMQELY 364
+ HS+ +SS+MY +Y+ V L DD+ G+QELY
Sbjct: 814 LGHSSSESSMMYRHYRGKV-SLTDDDVKGVQELY 846
Score = 30.7 bits (66), Expect = 1.4
Identities = 19/54 (35%), Positives = 21/54 (38%), Gaps = 2/54 (3%)
Frame = +3
Query: 99 GPGRVVAHAFPPPLGDIHFDDDETWGV--XXXXXXXXXXXXXXFFAVAVHEIGH 254
G +AHA PP G IH W V +VAVHEIGH
Sbjct: 757 GGEEALAHAHPPQDGRIHLHAARKWAVTNVAGAGGDAPPLAVDLESVAVHEIGH 810
>06_02_0148 -
12280794-12280962,12281102-12281210,12281283-12281385,
12281587-12281618,12281709-12281926,12282035-12282150,
12282428-12282683,12282912-12282999,12283393-12283468,
12283562-12283620,12285236-12285305,12285399-12285539
Length = 478
Score = 29.9 bits (64), Expect = 2.4
Identities = 26/91 (28%), Positives = 39/91 (42%), Gaps = 1/91 (1%)
Frame = +2
Query: 278 VKSSVMYPYYQLPVDKLHVDDILG-MQELYLNVKGSEESEGTERTVGSSQAPRFTKTDSE 454
+ S+ M PY DK L M +++ + + RT+ ++ PRFTK S+
Sbjct: 241 IVSNWMIPYEDSKEDKHATKRALDFMYGWFMDPLTKGDYPVSMRTLVGNRLPRFTKEQSK 300
Query: 455 EFDDAPDLCMTNYDTLQVYTARYTCSKKSGS 547
+ + D NY YTARY K S
Sbjct: 301 AINGSFDFIGLNY-----YTARYIQGTKQDS 326
>12_02_1061 - 25756366-25757567,25758692-25758797
Length = 435
Score = 29.5 bits (63), Expect = 3.2
Identities = 13/29 (44%), Positives = 19/29 (65%)
Frame = +2
Query: 53 SLFRFRQPWRRVPLRWPWSSSGPRVSTAT 139
S+ RF P +P+R P ++ GP VSTA+
Sbjct: 396 SVLRFEAPLPSLPVRMPVATYGPPVSTAS 424
>06_01_0024 +
233101-233189,233259-233340,233430-233493,233636-233826,
233901-233978,234133-234207,234436-234506,234710-234826,
234915-235016,235196-235316,235451-235537,235708-235794,
236237-236338,236629-236692,237554-237580,237581-237636,
238185-238256,238540-238622,238953-239001,239335-239397,
239633-239722,239823-239909,240072-240146,240222-240280,
240511-240604,240681-240899,240998-241092,241504-241594,
241663-241767,241847-241885,242263-242352,242538-242639,
242837-242918,243075-243160,243264-243362
Length = 1030
Score = 28.3 bits (60), Expect = 7.4
Identities = 12/18 (66%), Positives = 13/18 (72%)
Frame = -1
Query: 728 LIRRNDGLNSQYLFSEKT 675
L RR DGLN +Y FS KT
Sbjct: 438 LYRRTDGLNCEYTFSGKT 455
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,346,713
Number of Sequences: 37544
Number of extensions: 476406
Number of successful extensions: 1386
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1327
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1378
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2127163404
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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