Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS31031
         (788 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF134820-1|AAD40235.1|  166|Apis mellifera putative Ets-family p...    23   3.2  
M29490-1|AAA27725.1|  109|Apis mellifera protein ( Bee homeobox-...    23   4.3  
DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    23   4.3  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    23   4.3  
M29489-1|AAA27724.1|  109|Apis mellifera protein ( Bee homeobox-...    21   9.9  

>AF134820-1|AAD40235.1|  166|Apis mellifera putative Ets-family
           protein protein.
          Length = 166

 Score = 23.0 bits (47), Expect = 3.2
 Identities = 10/40 (25%), Positives = 18/40 (45%)
 Frame = +2

Query: 365 LNVKGSEESEGTERTVGSSQAPRFTKTDSEEFDDAPDLCM 484
           LN+  S+  +  E    +SQ PR T   +    D  ++ +
Sbjct: 71  LNIISSDHDDSDEEYAANSQPPRITSVPNTSRLDKSEISL 110


>M29490-1|AAA27725.1|  109|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone E30. ).
          Length = 109

 Score = 22.6 bits (46), Expect = 4.3
 Identities = 8/28 (28%), Positives = 15/28 (53%)
 Frame = -2

Query: 325 LVNGQLIIWIHNRRFDVRM*HAQRCPIS 242
           L   Q+ IW  N+R  ++    Q+ P++
Sbjct: 59  LTEAQIKIWFQNKRAKIKKASGQKNPLA 86


>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 22.6 bits (46), Expect = 4.3
 Identities = 9/27 (33%), Positives = 15/27 (55%)
 Frame = +3

Query: 279 SNLLLCIHIISCPLTSYTWTTYWACKS 359
           S  L+ I+I  C L   +W ++W  +S
Sbjct: 242 SYYLIQIYIPCCMLVIVSWVSFWLDQS 268


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 22.6 bits (46), Expect = 4.3
 Identities = 9/27 (33%), Positives = 15/27 (55%)
 Frame = +3

Query: 279 SNLLLCIHIISCPLTSYTWTTYWACKS 359
           S  L+ I+I  C L   +W ++W  +S
Sbjct: 242 SYYLIQIYIPCCMLVIVSWVSFWLDQS 268


>M29489-1|AAA27724.1|  109|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone E60. ).
          Length = 109

 Score = 21.4 bits (43), Expect = 9.9
 Identities = 8/28 (28%), Positives = 15/28 (53%)
 Frame = -2

Query: 325 LVNGQLIIWIHNRRFDVRM*HAQRCPIS 242
           L   Q+ IW  N+R  ++    Q+ P++
Sbjct: 59  LNEAQIKIWFQNKRAKIKKASGQKNPLA 86


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 220,574
Number of Sequences: 438
Number of extensions: 4833
Number of successful extensions: 43
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 43
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 43
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24882285
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)