Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS31026
         (732 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr ...    30   0.30 
SPCC132.01c ||SPCC1322.17c|DUF814 family protein|Schizosaccharom...    29   0.52 
SPAC17A5.14 |exo2||exonuclease II Exo2 |Schizosaccharomyces pomb...    28   1.6  
SPAC29A4.09 |||rRNA processing protein Rrp17|Schizosaccharomyces...    27   2.1  
SPAC8F11.04 |||U3 snoRNP-associated protein Cic1/Utp30 family |S...    27   2.1  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    27   2.8  
SPBC557.04 |ppk29||Ark1/Prk1 family protein kinase Ppk29|Schizos...    27   3.6  
SPCC162.08c |nup211||nuclear pore complex associated protein|Sch...    27   3.6  
SPBP23A10.10 |ppk32||serine/threonine protein kinase Ppk32 |Schi...    26   4.8  
SPAC9E9.05 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||...    26   4.8  
SPAC25H1.09 |mde5|meu30, SPAC4A8.01|alpha-amylase homolog Mde5|S...    26   4.8  
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    26   6.4  
SPAC20H4.03c |tfs1||transcription elongation factor TFIIS |Schiz...    26   6.4  
SPCC550.07 |||acetamidase |Schizosaccharomyces pombe|chr 3|||Manual    26   6.4  
SPAC2E12.02 |hsf1|hstf, hsf|transcription factor Hsf1|Schizosacc...    26   6.4  
SPAC4D7.13 |usp104|prp40|U1 snRNP-associated protein Usp104|Schi...    26   6.4  
SPAC167.05 ||SPAC57A7.01|Usp |Schizosaccharomyces pombe|chr 1|||...    25   8.4  
SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces...    25   8.4  

>SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1854

 Score = 30.3 bits (65), Expect = 0.30
 Identities = 11/41 (26%), Positives = 23/41 (56%)
 Frame = +1

Query: 64   SPTDLSVKHVDKDIPKVVARAAETTHAIEDNLSDKSDEQPK 186
            S +D S   V+  +P + +   +  H++ED+L   +D +P+
Sbjct: 1749 SVSDRSFSIVESTVPTIASGEGDDNHSVEDHLKVPTDNEPR 1789


>SPCC132.01c ||SPCC1322.17c|DUF814 family protein|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 1021

 Score = 29.5 bits (63), Expect = 0.52
 Identities = 22/83 (26%), Positives = 37/83 (44%), Gaps = 3/83 (3%)
 Frame = +1

Query: 25   AQELSQASTNDENSPTDLSVKHVDKDIPKVVARAAETTHAIEDNLSDKSDEQPKDLSVHR 204
            A+E+  +S    N  +++     + +I +       +   IED   +   E  K LS  +
Sbjct: 834  AREMEISSQIPSNDSSNVQTPTAESEIEEDGVSEPISAEVIEDQSRNSEAENEKGLSTEQ 893

Query: 205  RMATPHA---SPRRIEIPRALRE 264
            R    HA   S +R E+PR+L E
Sbjct: 894  RDEKKHAKVESFQRQEMPRSLFE 916


>SPAC17A5.14 |exo2||exonuclease II Exo2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1328

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 13/30 (43%), Positives = 15/30 (50%)
 Frame = +3

Query: 186 RSKRTQKDGHSARLTAENRNTASPSRESDA 275
           R  RT KD H ARL AE      P  + D+
Sbjct: 100 RRFRTAKDAHDARLKAERNGEDFPEEQFDS 129


>SPAC29A4.09 |||rRNA processing protein Rrp17|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 203

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 21/90 (23%), Positives = 37/90 (41%), Gaps = 3/90 (3%)
 Frame = +1

Query: 16  LNLAQELSQASTNDENSPTDLSVKHVDKDIPKVVARAAETTHAIEDNLSDKSDEQ---PK 186
           LN + E  + S+  E+S +    +      PK      +  H   + + D  DE+   PK
Sbjct: 89  LNSSLENDEESSQQEDSSSKSDSEEESSMEPKTTEYDEDDKHVTVEIVEDDDDEEIAYPK 148

Query: 187 DLSVHRRMATPHASPRRIEIPRALRENQMR 276
           +  V  R++ P   P R   P+   + + R
Sbjct: 149 EGFVTPRISPPPDVPLRPHKPKNAAKKKFR 178


>SPAC8F11.04 |||U3 snoRNP-associated protein Cic1/Utp30 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 373

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 16/57 (28%), Positives = 29/57 (50%)
 Frame = +1

Query: 16  LNLAQELSQASTNDENSPTDLSVKHVDKDIPKVVARAAETTHAIEDNLSDKSDEQPK 186
           + +A+E   +   + +    ++VK V K +   V  AA+TT+  ED+   K+   PK
Sbjct: 293 VEVAKESKDSKQQNVSDKKQVTVKEVPKKLS--VKNAAKTTNRDEDSKGKKAKASPK 347


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 23/85 (27%), Positives = 31/85 (36%), Gaps = 1/85 (1%)
 Frame = +3

Query: 285  PQPSGIPAVPS-SPEIFTMPVTXSKQALFLETXLSSPSPKMYTSEVTITKQQCEPLNLGQ 461
            P PS  P VP+ S  +  +PV  +K          +PS     S V        P     
Sbjct: 1211 PPPSTAPPVPTPSAGLPPVPVPTAKAPPVPAPSSEAPSVSTPRSSVPSPHSNASPSPTSS 1270

Query: 462  HRKSASPTVSSCSDEIGKLTRNSAS 536
               SA+P  +S S    K  R+  S
Sbjct: 1271 SMASAAPARTSVSRSKSKAERHETS 1295


>SPBC557.04 |ppk29||Ark1/Prk1 family protein kinase
           Ppk29|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 872

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 19/72 (26%), Positives = 31/72 (43%)
 Frame = +3

Query: 285 PQPSGIPAVPSSPEIFTMPVTXSKQALFLETXLSSPSPKMYTSEVTITKQQCEPLNLGQH 464
           P P+ I  VP+ P + T+      Q  F  T  +S  P +++   T    Q    ++ + 
Sbjct: 361 PMPAPIYNVPNVPTVPTVSPNPFLQPTFSGTSQASAHPSIHSQSATFNNTQ----DVNRQ 416

Query: 465 RKSASPTVSSCS 500
             S+   VSS S
Sbjct: 417 SVSSPKVVSSSS 428


>SPCC162.08c |nup211||nuclear pore complex associated
            protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1837

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 19/68 (27%), Positives = 36/68 (52%), Gaps = 1/68 (1%)
 Frame = +3

Query: 393  SPKMYTSEVTITKQQCEPLNLGQHRKSASPTVSSCSDEIGKLT-RNSASLKRNV*NVNQP 569
            S + YT+  T+       L L    + A+  +S CSD++ +LT +NS  L+ +   V Q 
Sbjct: 826  SNQEYTA--TVDSMNSRILELSNDLRVANSKLSECSDDVRRLTLQNSFDLREHQTLVLQL 883

Query: 570  RTSLR*IK 593
            ++++  +K
Sbjct: 884  QSNITELK 891


>SPBP23A10.10 |ppk32||serine/threonine protein kinase Ppk32
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 749

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 17/62 (27%), Positives = 27/62 (43%)
 Frame = +3

Query: 237 NRNTASPSRESDAMQSPQPSGIPAVPSSPEIFTMPVTXSKQALFLETXLSSPSPKMYTSE 416
           NR T  P        + +PS I    ++  IFT   + S Q +  ET  S+ S + Y+  
Sbjct: 610 NRITTDPFSSQTKEATSKPSSISPNKATTNIFTSQASLSSQGVARETS-SASSYRSYSQR 668

Query: 417 VT 422
            +
Sbjct: 669 AS 670


>SPAC9E9.05 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 313

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 22/76 (28%), Positives = 33/76 (43%)
 Frame = +3

Query: 243 NTASPSRESDAMQSPQPSGIPAVPSSPEIFTMPVTXSKQALFLETXLSSPSPKMYTSEVT 422
           N A   R +D  Q   P+   A PS+PE   +P + S       +  SSP P    S  +
Sbjct: 97  NEALQIRSADENQQSVPTVSIASPSTPE---LPPSSSPLLPPNGSESSSPIPLSLLSTSS 153

Query: 423 ITKQQCEPLNLGQHRK 470
           + +++  P NL    K
Sbjct: 154 LQQRKITPSNLSNTSK 169


>SPAC25H1.09 |mde5|meu30, SPAC4A8.01|alpha-amylase homolog
           Mde5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 513

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 11/28 (39%), Positives = 14/28 (50%)
 Frame = -3

Query: 283 DCIASDSLEGLAVFLFSAVRRAEWPSFC 200
           D +    ++GL V     VRR  WP FC
Sbjct: 213 DQVKQFKIDGLRVDATKHVRRTFWPGFC 240


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 14/51 (27%), Positives = 23/51 (45%)
 Frame = +3

Query: 246  TASPSRESDAMQSPQPSGIPAVPSSPEIFTMPVTXSKQALFLETXLSSPSP 398
            +A+P + S     P P  +P  PS+P +   P +     L   +  S P+P
Sbjct: 1696 SAAPPQMSAPTPPPPPMSVPPPPSAPPMPAGPPSAPPPPLPASSAPSVPNP 1746


>SPAC20H4.03c |tfs1||transcription elongation factor TFIIS
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 293

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 17/66 (25%), Positives = 31/66 (46%)
 Frame = +2

Query: 458 TTQEVSEPDSVELLG*NRKINKEFGEPQEKRIKRESTEDLAKINKVFNKCGEVKPKKIEW 637
           T Q +S   S EL   +R+  ++    QE     +  +    +  +F  CG+ K KK+ +
Sbjct: 208 TPQRLSTMTSAELASEDRR-KEDAKLEQENLFHAQGAKPQKAVTDLFT-CGKCKQKKVSY 265

Query: 638 ARVQFR 655
            ++Q R
Sbjct: 266 YQMQTR 271


>SPCC550.07 |||acetamidase |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 533

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 10/33 (30%), Positives = 20/33 (60%)
 Frame = +2

Query: 536 PQEKRIKRESTEDLAKINKVFNKCGEVKPKKIE 634
           P+  +IK    + +  + K+ ++CG + PK+IE
Sbjct: 21  PEPFKIKTLPKDTVLNVTKIPSECGLLTPKEIE 53


>SPAC2E12.02 |hsf1|hstf, hsf|transcription factor
           Hsf1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 609

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 16/42 (38%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
 Frame = +3

Query: 216 SARLTAENRN-TASPSRESDAMQSPQPSGIPAVPSSPEIFTM 338
           S RL  E +  T SP+ E  A   P P G  A  SS  I ++
Sbjct: 245 SRRLLLEAKYPTVSPTNEPSAHSRPSPQGTTANSSSASISSL 286


>SPAC4D7.13 |usp104|prp40|U1 snRNP-associated protein
           Usp104|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 695

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 13/53 (24%), Positives = 30/53 (56%), Gaps = 6/53 (11%)
 Frame = +1

Query: 100 DIPKVVARAAET------THAIEDNLSDKSDEQPKDLSVHRRMATPHASPRRI 240
           +IP+++AR +E       + A+ ++L ++   + +D ++H++     A  RRI
Sbjct: 493 NIPEIIARLSEKLKDREESEAVTEDLIEEVVNRLRDKAIHKKAEEKRADERRI 545


>SPAC167.05 ||SPAC57A7.01|Usp |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 601

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 15/52 (28%), Positives = 26/52 (50%)
 Frame = +1

Query: 43  ASTNDENSPTDLSVKHVDKDIPKVVARAAETTHAIEDNLSDKSDEQPKDLSV 198
           ++TN+ N  +D+      +DIP   A+  E  H +  +LS     +  DLS+
Sbjct: 232 SATNEANKLSDIQTSSPSQDIP---AKHLEPLH-LNRSLSSSPSSEDSDLSL 279


>SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1727

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 19/76 (25%), Positives = 35/76 (46%)
 Frame = +3

Query: 408  TSEVTITKQQCEPLNLGQHRKSASPTVSSCSDEIGKLTRNSASLKRNV*NVNQPRTSLR* 587
            TSE+     +C  LN   ++ SA+PT ++ S+          S K  + +  +  + +  
Sbjct: 1408 TSELEAKVAECHQLNEQLNKPSATPTATTQSEPSTVSLEEFNSTKEELSSTQRKLSEIMD 1467

Query: 588  IKCSTSAEKLNLKRSN 635
            I  +T+ E+L   R N
Sbjct: 1468 I-LNTTKEELEKVRQN 1482


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,726,199
Number of Sequences: 5004
Number of extensions: 54895
Number of successful extensions: 217
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 204
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 216
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 345237368
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)