Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS31026
         (732 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter...    27   0.24 
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       23   2.2  
AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.        22   6.8  

>AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter
           Am-EAAT protein.
          Length = 543

 Score = 26.6 bits (56), Expect = 0.24
 Identities = 20/57 (35%), Positives = 30/57 (52%)
 Frame = -2

Query: 266 FSRRARGISILRGEACGVAILLCTLRSLGCSSLLSDKLSSIACVVSAALATTLGISL 96
           F  +  GIS+  GE   V+    TL S+G +S+ S  L ++  V++A    T  ISL
Sbjct: 410 FIAQMNGISLGIGEVITVSFT-ATLASIGAASIPSAALITMLIVLTALGLPTNDISL 465


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 23.4 bits (48), Expect = 2.2
 Identities = 12/46 (26%), Positives = 24/46 (52%)
 Frame = +1

Query: 58  ENSPTDLSVKHVDKDIPKVVARAAETTHAIEDNLSDKSDEQPKDLS 195
           ++  +D    H + ++PK VA    ++   + N +   DE+P D+S
Sbjct: 224 KSDTSDGPESHQNSNVPKSVAGLNVSSRRSDMNGTTPLDEKPLDVS 269


>AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.
          Length = 200

 Score = 21.8 bits (44), Expect = 6.8
 Identities = 11/42 (26%), Positives = 18/42 (42%)
 Frame = +3

Query: 369 LETXLSSPSPKMYTSEVTITKQQCEPLNLGQHRKSASPTVSS 494
           ++   +SP+     S ++        +N  Q   S SPT SS
Sbjct: 27  IQACTTSPATASLESSLSAAAVAAAAVNYAQQHNSPSPTGSS 68


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 180,973
Number of Sequences: 438
Number of extensions: 3556
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22779405
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)