Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS31021
(784 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1834.04 |hht1||histone H3 h3.1|Schizosaccharomyces pombe|chr... 122 8e-29
SPBC8D2.04 |hht2|h3.2|histone H3 h3.2|Schizosaccharomyces pombe|... 122 8e-29
SPBC1105.11c |hht3|h3.3|histone H3 h3.3|Schizosaccharomyces pomb... 122 8e-29
SPBC1105.17 |cnp1|sim2|CENP-A|Schizosaccharomyces pombe|chr 2|||... 86 5e-18
SPAC3H5.06c |pol1|swi7, polA|DNA polymerase alpha catalytic subu... 25 9.3
SPAC607.06c |||metallopeptidase|Schizosaccharomyces pombe|chr 1|... 25 9.3
>SPAC1834.04 |hht1||histone H3 h3.1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 136
Score = 122 bits (293), Expect = 8e-29
Identities = 60/68 (88%), Positives = 61/68 (89%)
Frame = +1
Query: 256 ELLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVT 435
ELLIRKLPFQRLVREIAQDFKTDLRFQS+AIGALQEA EAYLV LFEDTNLCAIH KRVT
Sbjct: 60 ELLIRKLPFQRLVREIAQDFKTDLRFQSSAIGALQEAVEAYLVSLFEDTNLCAIHGKRVT 119
Query: 436 IMPKIFNL 459
I PK L
Sbjct: 120 IQPKDMQL 127
Score = 114 bits (274), Expect = 2e-26
Identities = 53/56 (94%), Positives = 56/56 (100%)
Frame = +2
Query: 80 MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQ 247
MARTKQTARKSTGGKAPRKQLA+KAARK+AP+TGGVKKPHRYRPGTVALREIRRYQ
Sbjct: 1 MARTKQTARKSTGGKAPRKQLASKAARKAAPATGGVKKPHRYRPGTVALREIRRYQ 56
Score = 26.2 bits (55), Expect = 5.3
Identities = 10/14 (71%), Positives = 14/14 (100%)
Frame = +3
Query: 444 EDIQLARRIRGERA 485
+D+QLARR+RGER+
Sbjct: 123 KDMQLARRLRGERS 136
>SPBC8D2.04 |hht2|h3.2|histone H3 h3.2|Schizosaccharomyces pombe|chr
2|||Manual
Length = 136
Score = 122 bits (293), Expect = 8e-29
Identities = 60/68 (88%), Positives = 61/68 (89%)
Frame = +1
Query: 256 ELLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVT 435
ELLIRKLPFQRLVREIAQDFKTDLRFQS+AIGALQEA EAYLV LFEDTNLCAIH KRVT
Sbjct: 60 ELLIRKLPFQRLVREIAQDFKTDLRFQSSAIGALQEAVEAYLVSLFEDTNLCAIHGKRVT 119
Query: 436 IMPKIFNL 459
I PK L
Sbjct: 120 IQPKDMQL 127
Score = 114 bits (274), Expect = 2e-26
Identities = 53/56 (94%), Positives = 56/56 (100%)
Frame = +2
Query: 80 MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQ 247
MARTKQTARKSTGGKAPRKQLA+KAARK+AP+TGGVKKPHRYRPGTVALREIRRYQ
Sbjct: 1 MARTKQTARKSTGGKAPRKQLASKAARKAAPATGGVKKPHRYRPGTVALREIRRYQ 56
Score = 26.2 bits (55), Expect = 5.3
Identities = 10/14 (71%), Positives = 14/14 (100%)
Frame = +3
Query: 444 EDIQLARRIRGERA 485
+D+QLARR+RGER+
Sbjct: 123 KDMQLARRLRGERS 136
>SPBC1105.11c |hht3|h3.3|histone H3 h3.3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 136
Score = 122 bits (293), Expect = 8e-29
Identities = 60/68 (88%), Positives = 61/68 (89%)
Frame = +1
Query: 256 ELLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVT 435
ELLIRKLPFQRLVREIAQDFKTDLRFQS+AIGALQEA EAYLV LFEDTNLCAIH KRVT
Sbjct: 60 ELLIRKLPFQRLVREIAQDFKTDLRFQSSAIGALQEAVEAYLVSLFEDTNLCAIHGKRVT 119
Query: 436 IMPKIFNL 459
I PK L
Sbjct: 120 IQPKDMQL 127
Score = 114 bits (274), Expect = 2e-26
Identities = 53/56 (94%), Positives = 56/56 (100%)
Frame = +2
Query: 80 MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQ 247
MARTKQTARKSTGGKAPRKQLA+KAARK+AP+TGGVKKPHRYRPGTVALREIRRYQ
Sbjct: 1 MARTKQTARKSTGGKAPRKQLASKAARKAAPATGGVKKPHRYRPGTVALREIRRYQ 56
Score = 26.2 bits (55), Expect = 5.3
Identities = 10/14 (71%), Positives = 14/14 (100%)
Frame = +3
Query: 444 EDIQLARRIRGERA 485
+D+QLARR+RGER+
Sbjct: 123 KDMQLARRLRGERS 136
>SPBC1105.17 |cnp1|sim2|CENP-A|Schizosaccharomyces pombe|chr
2|||Manual
Length = 120
Score = 86.2 bits (204), Expect = 5e-18
Identities = 46/74 (62%), Positives = 57/74 (77%), Gaps = 6/74 (8%)
Frame = +1
Query: 256 ELLIRKLPFQRLVREIAQDF----KTD--LRFQSAAIGALQEASEAYLVGLFEDTNLCAI 417
+LLI++LPF R+VREI+ +F TD LR+QS A+ LQEA+EA+LV LFEDTNLCAI
Sbjct: 40 DLLIQRLPFSRIVREISSEFVANFSTDVGLRWQSTALQCLQEAAEAFLVHLFEDTNLCAI 99
Query: 418 HAKRVTIMPKIFNL 459
HAKRVTIM + L
Sbjct: 100 HAKRVTIMQRDMQL 113
Score = 35.1 bits (77), Expect = 0.011
Identities = 19/35 (54%), Positives = 24/35 (68%), Gaps = 4/35 (11%)
Frame = +2
Query: 155 ARKSAPSTGG--VKKPH--RYRPGTVALREIRRYQ 247
A+KS + G + +P RYRPGT ALREIR+YQ
Sbjct: 2 AKKSLMAEPGDPIPRPRKKRYRPGTTALREIRKYQ 36
>SPAC3H5.06c |pol1|swi7, polA|DNA polymerase alpha catalytic subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1405
Score = 25.4 bits (53), Expect = 9.3
Identities = 15/49 (30%), Positives = 20/49 (40%)
Frame = -2
Query: 408 QVGVFEQANEISLACLLESSDGGRLETQISFEILSDFSHKTLERQLTDK 262
Q+G F +AN I A + + E + EIL ER T K
Sbjct: 112 QIGAFFKANAIQPASRIANRKNNEKEDEFMAEILGSIDQDIPERLSTKK 160
>SPAC607.06c |||metallopeptidase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 612
Score = 25.4 bits (53), Expect = 9.3
Identities = 9/21 (42%), Positives = 15/21 (71%)
Frame = -2
Query: 363 LLESSDGGRLETQISFEILSD 301
L + DGG+LE Q+ +++L D
Sbjct: 72 LFTTDDGGKLELQVYYQLLVD 92
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,028,636
Number of Sequences: 5004
Number of extensions: 58854
Number of successful extensions: 156
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 145
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 155
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 379359666
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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