Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS31019
         (784 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF281078-1|AAF82131.1| 2051|Anopheles gambiae vitellogenin 1 pro...    27   0.65 
AJ535206-1|CAD59406.1| 1376|Anopheles gambiae SMC4 protein protein.    26   1.5  
AB090815-2|BAC57906.1|  973|Anopheles gambiae reverse transcript...    24   4.6  
AB090819-2|BAC57914.1| 1022|Anopheles gambiae reverse transcript...    23   8.1  

>AF281078-1|AAF82131.1| 2051|Anopheles gambiae vitellogenin 1 protein.
          Length = 2051

 Score = 27.1 bits (57), Expect = 0.65
 Identities = 14/52 (26%), Positives = 29/52 (55%), Gaps = 2/52 (3%)
 Frame = -1

Query: 154  HG--NRVFVTHSKVLLHHTQSEINVRLTVCNHKLIPIKLNQKQQKYHSRFTV 5
            HG  N++F+    +L  + Q++ N+ +    H+L  + +N K Q+ H ++ V
Sbjct: 1728 HGEDNQLFL--KAILGQYKQNDYNIDIIPHGHELPMVYINGKPQQIHEKYAV 1777


>AJ535206-1|CAD59406.1| 1376|Anopheles gambiae SMC4 protein protein.
          Length = 1376

 Score = 25.8 bits (54), Expect = 1.5
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = -3

Query: 269 SGRDMTHRWTAPRNCPSPVSGNACRDD 189
           SG D  ++  AP+  P P+  +A  DD
Sbjct: 9   SGADGANKAAAPQQAPEPMDADAADDD 35


>AB090815-2|BAC57906.1|  973|Anopheles gambiae reverse transcriptase
           protein.
          Length = 973

 Score = 24.2 bits (50), Expect = 4.6
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = -3

Query: 320 SASNISMTRWTSGFCCSSGRDMTH 249
           SA  +SM +W S + CS+    TH
Sbjct: 839 SAKQLSMRKWQSEWDCSTKGRTTH 862


>AB090819-2|BAC57914.1| 1022|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1022

 Score = 23.4 bits (48), Expect = 8.1
 Identities = 13/36 (36%), Positives = 21/36 (58%)
 Frame = +1

Query: 388 KLSKLRFAFRIYDMDNDGFISNGELFQVLKMMVGNN 495
           K +K    +R+ +M +   I  GE++ +LK MVG N
Sbjct: 326 KRTKKATWYRLVNMSD--IILFGEVYVILKRMVGGN 359


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 832,764
Number of Sequences: 2352
Number of extensions: 15875
Number of successful extensions: 46
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 43
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 46
length of database: 563,979
effective HSP length: 63
effective length of database: 415,803
effective search space used: 81913191
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)