Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS31019
         (784 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              23   2.4  
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    23   4.2  
DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    22   5.6  
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    22   5.6  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    22   5.6  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    22   7.4  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    22   7.4  

>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 23.4 bits (48), Expect = 2.4
 Identities = 15/47 (31%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
 Frame = +1

Query: 262 LPELQQNPLVQRVIDIFDADGNGEVDFKEFIQGVSQ-FSVKGDKLSK 399
           L EL +   +  +I   D DG+G+++  EF    S+ +SV    L K
Sbjct: 267 LEELCRGCNLGHMISYDDTDGDGKLNVNEFYMAFSKLYSVSVVSLDK 313


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 22.6 bits (46), Expect = 4.2
 Identities = 6/13 (46%), Positives = 9/13 (69%)
 Frame = -1

Query: 784 CTNWPYPDVIMNL 746
           C   PYPD++ N+
Sbjct: 218 CCEEPYPDIVFNI 230


>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
           isoform B protein.
          Length = 931

 Score = 22.2 bits (45), Expect = 5.6
 Identities = 9/26 (34%), Positives = 14/26 (53%)
 Frame = +1

Query: 418 IYDMDNDGFISNGELFQVLKMMVGNN 495
           I +M ND  +SN +++     M  NN
Sbjct: 363 IQEMKNDVLLSNNDVYLYQNTMSNNN 388


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
           isoform A protein.
          Length = 969

 Score = 22.2 bits (45), Expect = 5.6
 Identities = 9/26 (34%), Positives = 14/26 (53%)
 Frame = +1

Query: 418 IYDMDNDGFISNGELFQVLKMMVGNN 495
           I +M ND  +SN +++     M  NN
Sbjct: 401 IQEMKNDVLLSNNDVYLYQNTMSNNN 426


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 22.2 bits (45), Expect = 5.6
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = -3

Query: 242 TAPRNCPSPVSGNACRDDGS 183
           +A R C SP++G+     GS
Sbjct: 586 SAVRKCMSPINGSGASGSGS 605


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 21.8 bits (44), Expect = 7.4
 Identities = 15/43 (34%), Positives = 21/43 (48%)
 Frame = -2

Query: 357 LDELLEVDLSVPVCVEYIDDALDKWILLQLR*RHDSSMDSAPE 229
           L +L E+ L     VE   DAL    +L+      +S+DS PE
Sbjct: 236 LRQLQELHLQRNAIVEIAGDALTGLTVLRTFNASYNSLDSLPE 278


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 21.8 bits (44), Expect = 7.4
 Identities = 7/20 (35%), Positives = 11/20 (55%)
 Frame = -3

Query: 284  GFCCSSGRDMTHRWTAPRNC 225
            G C +   D T+ +  P+NC
Sbjct: 1596 GLCGNFDHDSTNDFVGPKNC 1615



 Score = 21.4 bits (43), Expect = 9.8
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = -2

Query: 384 PFHTKLRHALDELLEVDLSVP 322
           PF  +++H L   L VD  VP
Sbjct: 106 PFQIRMKHGLIRDLIVDRDVP 126


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 218,948
Number of Sequences: 438
Number of extensions: 4881
Number of successful extensions: 20
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24639531
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)