Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS31017
(797 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_0407 - 24983491-24983575,24983655-24984015,24984367-249844... 123 1e-28
01_03_0217 + 13879259-13879270,13880322-13880683,13880771-13880855 123 1e-28
08_02_1600 + 28133818-28133900,28134240-28134345,28135169-281352... 31 1.4
12_01_0748 - 6728221-6728305,6728788-6728842,6729202-6729289,672... 30 1.9
04_04_1035 + 30283456-30283536,30284823-30285359,30285508-302865... 29 3.2
04_03_0995 + 21521877-21521977,21522152-21522217,21523630-215236... 28 9.9
>04_04_0407 -
24983491-24983575,24983655-24984015,24984367-24984406,
24984466-24984468
Length = 162
Score = 123 bits (297), Expect = 1e-28
Identities = 60/101 (59%), Positives = 71/101 (70%)
Frame = +2
Query: 494 FPQTQTFEPPRHPKYPRKSLPKRNRMDAYNIIKFPLTSEAAMKKIEDNNTLVFIVHTSAN 673
F + +T + R PKYPR S P RN++D Y I+K+PLT+E+AMKKIEDNNTLVFIV A+
Sbjct: 52 FHRPKTLKKSRDPKYPRVSTPGRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDLKAD 111
Query: 674 KHHIKAAVKKLYDINVAKVNTFSGPDGKKKRTYDSLEIYDA 796
K IKAAVKK+YDI KVNT PDGKKK YDA
Sbjct: 112 KKKIKAAVKKMYDIQAKKVNTLIRPDGKKKAYVKLTPDYDA 152
Score = 33.5 bits (73), Expect = 0.20
Identities = 17/33 (51%), Positives = 20/33 (60%)
Frame = +3
Query: 417 KALKAQRKVVKGEHGKRVRKIRNSVHFRRPKRL 515
+ALKA + V G K +KIR SV F RPK L
Sbjct: 26 QALKAAKAVKSGTAKKTTKKIRTSVTFHRPKTL 58
>01_03_0217 + 13879259-13879270,13880322-13880683,13880771-13880855
Length = 152
Score = 123 bits (297), Expect = 1e-28
Identities = 60/101 (59%), Positives = 71/101 (70%)
Frame = +2
Query: 494 FPQTQTFEPPRHPKYPRKSLPKRNRMDAYNIIKFPLTSEAAMKKIEDNNTLVFIVHTSAN 673
F + +T + R PKYPR S P RN++D Y I+K+PLT+E+AMKKIEDNNTLVFIV A+
Sbjct: 42 FHRPKTLKKARDPKYPRVSAPGRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDLKAD 101
Query: 674 KHHIKAAVKKLYDINVAKVNTFSGPDGKKKRTYDSLEIYDA 796
K IKAAVKK+YDI KVNT PDGKKK YDA
Sbjct: 102 KKKIKAAVKKMYDIQAKKVNTLIRPDGKKKAYVKLTPDYDA 142
Score = 31.1 bits (67), Expect = 1.1
Identities = 15/33 (45%), Positives = 20/33 (60%)
Frame = +3
Query: 417 KALKAQRKVVKGEHGKRVRKIRNSVHFRRPKRL 515
+ALK + V G ++ +KIR SV F RPK L
Sbjct: 16 QALKVAKAVKSGSIKRKSKKIRTSVTFHRPKTL 48
>08_02_1600 +
28133818-28133900,28134240-28134345,28135169-28135255,
28135354-28135438,28135510-28135691,28135921-28135991,
28136078-28136168,28136250-28136324,28136436-28136537,
28136620-28136742,28136823-28136891,28136990-28137058,
28137158-28137211,28137315-28137368
Length = 416
Score = 30.7 bits (66), Expect = 1.4
Identities = 17/70 (24%), Positives = 33/70 (47%)
Frame = +3
Query: 474 KIRNSVHFRRPKRLNLLGTLNTQGSLCLREIAWMPTTSLNSLSRLKQQ*RRLKITTPWSL 653
K NSV R K + + NT +CL+ +P + ++L+RL + + ++ +
Sbjct: 183 KALNSVASRNVKVIVVGNPCNTNALICLKNAPNIPAKNFHALTRLDENRAKCQLALKAGV 242
Query: 654 LFTQVQTSTI 683
+ +V TI
Sbjct: 243 FYDKVSNMTI 252
>12_01_0748 -
6728221-6728305,6728788-6728842,6729202-6729289,
6729681-6729818,6729978-6730142,6730235-6730354,
6730555-6730631,6730738-6731113,6731523-6732617
Length = 732
Score = 30.3 bits (65), Expect = 1.9
Identities = 13/35 (37%), Positives = 23/35 (65%)
Frame = -3
Query: 537 YLGCLGGSNVWVCGNAQSCEFSVLSSHVHLLQPSS 433
YLGC+GG ++ N +C+ ++ VHLL+P++
Sbjct: 695 YLGCIGG--LYKRTNFANCKTETETNQVHLLEPAT 727
>04_04_1035 + 30283456-30283536,30284823-30285359,30285508-30286512,
30286718-30287042,30287563-30287818,30287901-30288117,
30288743-30289095,30289330-30289833,30291267-30292467,
30292614-30292970,30293258-30293495,30294083-30295125,
30295234-30296649,30296731-30296855,30297036-30297314,
30297352-30297382,30298957-30299022,30299447-30299689,
30299848-30299898,30299980-30300071,30300182-30300249,
30300515-30300600,30300720-30300824,30300994-30301127,
30302403-30302436,30302620-30302892,30303019-30303288,
30303384-30303974,30304065-30304214
Length = 3376
Score = 29.5 bits (63), Expect = 3.2
Identities = 12/29 (41%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
Frame = +3
Query: 441 VVKGEHGKRVRKIRNSVH-FRRPKRLNLL 524
++ +HGKR+ I N VH F P R+N +
Sbjct: 2663 ILTSQHGKRIAVIENEVHDFSMPDRVNAI 2691
>04_03_0995 +
21521877-21521977,21522152-21522217,21523630-21523696,
21523959-21524041,21524318-21524359,21524614-21524733,
21524806-21524869,21525028-21525113,21525217-21525299,
21525994-21526070,21526549-21526567,21526568-21526661,
21527042-21527087
Length = 315
Score = 27.9 bits (59), Expect = 9.9
Identities = 20/62 (32%), Positives = 30/62 (48%), Gaps = 2/62 (3%)
Frame = -1
Query: 497 EMHRVANFPY-SLPM-FTFYNLPLSLKCFSNRFHYFFLSLNPSLFGLRCNLQFGNCWLGF 324
E+ + PY PM F +L + CF ++++F +SLN L N F + GF
Sbjct: 181 EVSVIGYIPYFGKPMNFLLLSLMYAYYCFEYKWNFFAVSLNERLDFFESNWAF---FAGF 237
Query: 323 GS 318
GS
Sbjct: 238 GS 239
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,056,166
Number of Sequences: 37544
Number of extensions: 255652
Number of successful extensions: 676
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 660
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 676
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2162420256
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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