Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS31015
         (805 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB1E7.12 |rps602|rps6-2, rps6|40S ribosomal protein S6|Schizo...   142   4e-35
SPAC13G6.07c |rps601|rps6-1|40S ribosomal protein S6|Schizosacch...   142   5e-35
SPBC215.03c |csn1||COP9/signalosome complex subunit Csn1|Schizos...    26   7.2  
SPBC31F10.13c |hip1|hir1|hira protein Hip1|Schizosaccharomyces p...    25   9.5  

>SPAPB1E7.12 |rps602|rps6-2, rps6|40S ribosomal protein
           S6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 239

 Score =  142 bits (345), Expect = 4e-35
 Identities = 65/90 (72%), Positives = 78/90 (86%)
 Frame = +2

Query: 254 GHSCYRPRRDGERKRKSVRGCIVDANLSVLALVIVRKGAQEIPGLTDGNVPRRLGPKRAS 433
           GH CYRPRRDGERKRKSVRGCIV  +L+VLAL IV++G Q+IPGLTD  VP+RLGPKRAS
Sbjct: 80  GHPCYRPRRDGERKRKSVRGCIVGQDLAVLALAIVKQGEQDIPGLTDVTVPKRLGPKRAS 139

Query: 434 KIRKLFNLSKEDDVRRYVVKRVLPARKEKK 523
           KIR+ FNLSKEDDVR++V++R +  +KE K
Sbjct: 140 KIRRFFNLSKEDDVRQFVIRREVVPKKEGK 169



 Score =  110 bits (265), Expect = 2e-25
 Identities = 54/98 (55%), Positives = 67/98 (68%)
 Frame = +3

Query: 18  MKLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVEADQLGDEWKGYVLRVAGGNDKQG 197
           MKLN+SYPA G QKL E+ D+ +LR+F EKRMG EV  D +G E+ GYV ++ GGNDKQG
Sbjct: 1   MKLNISYPANGTQKLIEIDDDRRLRVFMEKRMGQEVPGDSVGPEFAGYVFKITGGNDKQG 60

Query: 198 FPMKQGVLTNSRVRLLMSKATHVTDRAAMERENVNQFV 311
           FPM QGVL   RVRLL+ +A H   R   + E   + V
Sbjct: 61  FPMFQGVLLPHRVRLLL-RAGHPCYRPRRDGERKRKSV 97



 Score = 47.2 bits (107), Expect = 3e-06
 Identities = 28/72 (38%), Positives = 38/72 (52%)
 Frame = +1

Query: 487 RQTRAPSQEGKENAKPRHKAPKIQRLVTPVVLQXXXXXXXXXXXXXXXXXSSEAEYAKLL 666
           R+   P +EGK   KP  KAPKIQRLVTP  LQ                    AE+A+L+
Sbjct: 159 RREVVPKKEGK---KPYTKAPKIQRLVTPRTLQHKRHRFALKRRQAEKNREEAAEFAQLM 215

Query: 667 AQRKKESKVRRQ 702
           A+R  E+K +++
Sbjct: 216 AKRVAEAKQKKE 227


>SPAC13G6.07c |rps601|rps6-1|40S ribosomal protein
           S6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 239

 Score =  142 bits (344), Expect = 5e-35
 Identities = 64/90 (71%), Positives = 78/90 (86%)
 Frame = +2

Query: 254 GHSCYRPRRDGERKRKSVRGCIVDANLSVLALVIVRKGAQEIPGLTDGNVPRRLGPKRAS 433
           GH CYRPRRDGERKRKSVRGCIV  +L+VLAL I+++G Q+IPGLTD  VP+RLGPKRAS
Sbjct: 80  GHPCYRPRRDGERKRKSVRGCIVGQDLAVLALAIIKQGEQDIPGLTDVTVPKRLGPKRAS 139

Query: 434 KIRKLFNLSKEDDVRRYVVKRVLPARKEKK 523
           KIR+ FNLSKEDDVR++V++R +  +KE K
Sbjct: 140 KIRRFFNLSKEDDVRQFVIRREVVPKKEGK 169



 Score =  110 bits (265), Expect = 2e-25
 Identities = 54/98 (55%), Positives = 67/98 (68%)
 Frame = +3

Query: 18  MKLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVEADQLGDEWKGYVLRVAGGNDKQG 197
           MKLN+SYPA G QKL E+ D+ +LR+F EKRMG EV  D +G E+ GYV ++ GGNDKQG
Sbjct: 1   MKLNISYPANGTQKLIEIDDDRRLRVFMEKRMGQEVPGDSVGPEFAGYVFKITGGNDKQG 60

Query: 198 FPMKQGVLTNSRVRLLMSKATHVTDRAAMERENVNQFV 311
           FPM QGVL   RVRLL+ +A H   R   + E   + V
Sbjct: 61  FPMFQGVLLPHRVRLLL-RAGHPCYRPRRDGERKRKSV 97



 Score = 48.4 bits (110), Expect = 1e-06
 Identities = 29/72 (40%), Positives = 38/72 (52%)
 Frame = +1

Query: 487 RQTRAPSQEGKENAKPRHKAPKIQRLVTPVVLQXXXXXXXXXXXXXXXXXSSEAEYAKLL 666
           R+   P +EGK   KP  KAPKIQRLVTP  LQ                    AE+A+L+
Sbjct: 159 RREVVPKKEGK---KPYTKAPKIQRLVTPRTLQHKRHRFALKRRQAEKNREEAAEFAQLM 215

Query: 667 AQRKKESKVRRQ 702
           A+R  E+K +R+
Sbjct: 216 AKRVAEAKQKRE 227


>SPBC215.03c |csn1||COP9/signalosome complex subunit
           Csn1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 422

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 26/99 (26%), Positives = 43/99 (43%), Gaps = 2/99 (2%)
 Frame = +3

Query: 30  VSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVEADQLGDEWKGYVLRV--AGGNDKQGFP 203
           + Y A    K+   VD H    F EK +   +EA +L  +      RV     ++ + F 
Sbjct: 317 IPYSALPFSKI--AVDFHIDENFIEKNLLEIIEAKKLNGKVDSLQKRVYIEPSSEPENF- 373

Query: 204 MKQGVLTNSRVRLLMSKATHVTDRAAMERENVNQFVDVL 320
             + +   ++  LL SKA ++   AAM  EN +    V+
Sbjct: 374 --EDIKNIAQTSLLYSKALYLQTLAAMNTENTDDEAPVI 410


>SPBC31F10.13c |hip1|hir1|hira protein Hip1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 932

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 15/45 (33%), Positives = 22/45 (48%)
 Frame = -1

Query: 472 IIFFAKVEQLTDFGSTFGT*TAGYISISQSRNFLGTLAHNNKSQD 338
           +I + K E +   GSTFG   +G       R++   L H+N  QD
Sbjct: 98  VIIWHKEEAIPGLGSTFG---SGEKHTENWRSYRRLLGHDNDIQD 139


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,143,465
Number of Sequences: 5004
Number of extensions: 62086
Number of successful extensions: 158
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 149
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 158
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 390427050
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)