Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS31009
         (747 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0507 - 8999902-9000649,9001106-9001225,9001314-9001394,900...    33   0.32 
11_04_0010 - 12139533-12139571,12140893-12141230,12141235-12141721     29   5.2  
06_02_0306 + 14115751-14116450,14116882-14117691,14118957-14119141     29   5.2  
05_06_0144 - 25973635-25973801,25973878-25973947,25974049-259741...    28   6.9  
02_01_0190 + 1276808-1278214,1278450-1278743,1278815-1279087,127...    28   9.1  

>03_02_0507 -
           8999902-9000649,9001106-9001225,9001314-9001394,
           9001591-9001613
          Length = 323

 Score = 32.7 bits (71), Expect = 0.32
 Identities = 15/36 (41%), Positives = 20/36 (55%)
 Frame = -1

Query: 423 ELRASQHRGRSTNQAANNKATRHSWMGRDERNTRHT 316
           E   SQH G+ T +  NN+ +  S   RD R T+HT
Sbjct: 68  EKSPSQHSGKETRRKQNNQLSESSEDERDGRRTKHT 103


>11_04_0010 - 12139533-12139571,12140893-12141230,12141235-12141721
          Length = 287

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 18/63 (28%), Positives = 31/63 (49%)
 Frame = +1

Query: 178 YKRLVKRWLNKTYRNLKLTMT*KIMSPSSWQ*NWLGRSRLQPSRWMGVACITFISPHPTV 357
           Y+   KRW +K  ++ +     K++  +S +    G  +L+ S+WMG   +   SPH  V
Sbjct: 207 YQDRTKRWHDKRIKHKEFKAGDKVLLFNS-RVKLFGHGKLR-SKWMGPYTVVDASPHGAV 264

Query: 358 PCR 366
             R
Sbjct: 265 TLR 267


>06_02_0306 + 14115751-14116450,14116882-14117691,14118957-14119141
          Length = 564

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 19/63 (30%), Positives = 29/63 (46%)
 Frame = +1

Query: 178 YKRLVKRWLNKTYRNLKLTMT*KIMSPSSWQ*NWLGRSRLQPSRWMGVACITFISPHPTV 357
           YK   KRW +K  +N K     K++  +S +    G  +LQ S+W G   +   S H  +
Sbjct: 170 YKERTKRWHDKRIKNKKFKPGDKVLMFNS-RVKLFGHRKLQ-SKWEGPFDVIDTSSHEAI 227

Query: 358 PCR 366
             R
Sbjct: 228 TLR 230


>05_06_0144 -
           25973635-25973801,25973878-25973947,25974049-25974190,
           25974647-25974827,25975248-25975443
          Length = 251

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 13/29 (44%), Positives = 19/29 (65%)
 Frame = +3

Query: 210 NIPELKIDDDIENNVAQ*LAVKLARAIPT 296
           NIPE+KI +D+  NVA+ L  ++ R   T
Sbjct: 130 NIPEVKIPEDLAVNVARSLRFEINRGFAT 158


>02_01_0190 +
           1276808-1278214,1278450-1278743,1278815-1279087,
           1279204-1279336,1279425-1279551,1279788-1280284,
           1280578-1280642,1280722-1280823,1281020-1281162,
           1281761-1281816,1282214-1282869,1282975-1283165,
           1283280-1283574,1283738-1283778,1284082-1284104,
           1284173-1284369,1284472-1284581,1285309-1285639,
           1285968-1286060,1286095-1286166,1286626-1286886
          Length = 1788

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = -2

Query: 368 KRQGTVGWGEMNVIHATPIHLEGCSRDRPSQFYCQL 261
           KRQ + G        A P+HLEG  R +P+  Y Q+
Sbjct: 375 KRQASFGQHWEEGAAAQPMHLEGIGRGQPAIGYMQI 410


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,693,001
Number of Sequences: 37544
Number of extensions: 414202
Number of successful extensions: 956
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 934
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 956
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1980691104
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)