Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS31009
         (747 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006834-1|AAF40010.3| 8545|Caenorhabditis elegans Abnormal nucl...    37   0.017
AF077531-7|AAL27240.1|  418|Caenorhabditis elegans Gex interacti...    32   0.38 
AF077531-6|AAC64616.2|  408|Caenorhabditis elegans Gex interacti...    32   0.38 
Z66519-10|CAD59139.1|  446|Caenorhabditis elegans Hypothetical p...    31   0.66 
U80027-1|AAC48122.2|  338|Caenorhabditis elegans Serpentine rece...    29   4.6  
AC024847-6|AAF60855.1|  909|Caenorhabditis elegans Patched relat...    28   6.1  
Z47812-10|CAH04720.1|  979|Caenorhabditis elegans Hypothetical p...    28   8.1  
Z47812-6|CAC70105.1|  984|Caenorhabditis elegans Hypothetical pr...    28   8.1  
Z47812-5|CAA87792.1|  980|Caenorhabditis elegans Hypothetical pr...    28   8.1  

>AC006834-1|AAF40010.3| 8545|Caenorhabditis elegans Abnormal nuclear
            anchorage protein1 protein.
          Length = 8545

 Score = 36.7 bits (81), Expect = 0.017
 Identities = 13/24 (54%), Positives = 16/24 (66%)
 Frame = +2

Query: 404  CCDALNSLAQSLTPQLRYVRGPPP 475
            CC  LN+ A+S  P L +V GPPP
Sbjct: 8521 CCQLLNNFAKSFDPSLEFVNGPPP 8544


>AF077531-7|AAL27240.1|  418|Caenorhabditis elegans Gex interacting
           protein protein10, isoform b protein.
          Length = 418

 Score = 32.3 bits (70), Expect = 0.38
 Identities = 16/62 (25%), Positives = 28/62 (45%)
 Frame = +3

Query: 111 PNSPAHRAIAKRMEQTENEVRTLQASCKALVEQNIPELKIDDDIENNVAQ*LAVKLARAI 290
           P  P  R++ +     ENE+  +  +  AL+E+ +  L +   +  NVA      L R  
Sbjct: 13  PEKPKVRSVVRSDSGLENEIPKISGTSSALIEEGLSLLNLKSSLSPNVAPVAVDLLDRTC 72

Query: 291 PT 296
           P+
Sbjct: 73  PS 74


>AF077531-6|AAC64616.2|  408|Caenorhabditis elegans Gex interacting
           protein protein10, isoform a protein.
          Length = 408

 Score = 32.3 bits (70), Expect = 0.38
 Identities = 16/62 (25%), Positives = 28/62 (45%)
 Frame = +3

Query: 111 PNSPAHRAIAKRMEQTENEVRTLQASCKALVEQNIPELKIDDDIENNVAQ*LAVKLARAI 290
           P  P  R++ +     ENE+  +  +  AL+E+ +  L +   +  NVA      L R  
Sbjct: 13  PEKPKVRSVVRSDSGLENEIPKISGTSSALIEEGLSLLNLKSSLSPNVAPVAVDLLDRTC 72

Query: 291 PT 296
           P+
Sbjct: 73  PS 74


>Z66519-10|CAD59139.1|  446|Caenorhabditis elegans Hypothetical
           protein B0334.11b protein.
          Length = 446

 Score = 31.5 bits (68), Expect = 0.66
 Identities = 15/58 (25%), Positives = 31/58 (53%)
 Frame = +3

Query: 111 PNSPAHRAIAKRMEQTENEVRTLQASCKALVEQNIPELKIDDDIENNVAQ*LAVKLAR 284
           P S      +KR+    N+V+    S + ++ Q + E KID  +E ++ + + +K++R
Sbjct: 37  PTSGESPPASKRLLSVRNQVQKPDQSLRLILRQLLHETKIDYHLEGSIKKDVQIKISR 94


>U80027-1|AAC48122.2|  338|Caenorhabditis elegans Serpentine
           receptor, class j protein11 protein.
          Length = 338

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 19/45 (42%), Positives = 27/45 (60%), Gaps = 6/45 (13%)
 Frame = -2

Query: 239 VIVNFKFRY-VLFNQRFTRRL---*GAY--FVFGLFHTLGNSPVC 123
           ++++F +RY VLFN R   RL    G +  FVF +FH +  S VC
Sbjct: 106 LVIHFIYRYLVLFNTRIIDRLLRPSGLFGLFVFFVFHGIAWSSVC 150


>AC024847-6|AAF60855.1|  909|Caenorhabditis elegans Patched related
           family protein 21 protein.
          Length = 909

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 11/20 (55%), Positives = 15/20 (75%), Gaps = 3/20 (15%)
 Frame = -2

Query: 584 LCYWDV---PITLCRVYISI 534
           LC+WD+   P+TLC V +SI
Sbjct: 742 LCFWDLDLDPVTLCAVIVSI 761


>Z47812-10|CAH04720.1|  979|Caenorhabditis elegans Hypothetical
           protein T05H10.5c protein.
          Length = 979

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 15/39 (38%), Positives = 20/39 (51%)
 Frame = +1

Query: 169 YAPYKRLVKRWLNKTYRNLKLTMT*KIMSPSSWQ*NWLG 285
           Y   KR VK WL     NLKL ++  + SP  ++   LG
Sbjct: 753 YEEAKRKVKGWLGTAKSNLKLLLSITVNSPEPFRTPVLG 791


>Z47812-6|CAC70105.1|  984|Caenorhabditis elegans Hypothetical
           protein T05H10.5b protein.
          Length = 984

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 15/39 (38%), Positives = 20/39 (51%)
 Frame = +1

Query: 169 YAPYKRLVKRWLNKTYRNLKLTMT*KIMSPSSWQ*NWLG 285
           Y   KR VK WL     NLKL ++  + SP  ++   LG
Sbjct: 758 YEEAKRKVKGWLGTAKSNLKLLLSITVNSPEPFRTPVLG 796


>Z47812-5|CAA87792.1|  980|Caenorhabditis elegans Hypothetical
           protein T05H10.5a protein.
          Length = 980

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 15/39 (38%), Positives = 20/39 (51%)
 Frame = +1

Query: 169 YAPYKRLVKRWLNKTYRNLKLTMT*KIMSPSSWQ*NWLG 285
           Y   KR VK WL     NLKL ++  + SP  ++   LG
Sbjct: 754 YEEAKRKVKGWLGTAKSNLKLLLSITVNSPEPFRTPVLG 792


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,473,698
Number of Sequences: 27780
Number of extensions: 345948
Number of successful extensions: 850
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 829
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 850
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1766990064
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)