Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS31008
         (746 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC354.12 |gpd3||glyceraldehyde 3-phosphate dehydrogenase Gpd3|...   138   8e-34
SPBC32F12.11 |tdh1|gpd1|glyceraldehyde-3-phosphate dehydrogenase...   133   3e-32
SPBC660.13c |ssb1|rpa1, rad11|DNA replication factor A subunit S...    27   3.8  
SPBC30B4.04c |sol1||SWI/SNF complex subunit Sol1|Schizosaccharom...    26   5.0  
SPAC14C4.02c |smc5|spr18|Smc5-6 complex SMC subunit Smc5 |Schizo...    26   5.0  
SPAC31A2.05c |mis4||cohesin loading factor Mis4|Schizosaccharomy...    26   5.0  
SPBC106.04 |ada1||adenosine deaminase Ada1 |Schizosaccharomyces ...    26   6.6  
SPBC577.07 |ubp10||ubiquitin C-terminal hydrolase Ubp10|Schizosa...    25   8.7  

>SPBC354.12 |gpd3||glyceraldehyde 3-phosphate dehydrogenase
           Gpd3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 335

 Score =  138 bits (334), Expect = 8e-34
 Identities = 65/88 (73%), Positives = 75/88 (85%)
 Frame = +1

Query: 259 VFSERDPKAIPWGKAGAEYVVESTGVFTTTDKASAHLEGGAKKVIISAPSADAPMFVVGV 438
           V +ERDP  I W  +GAEYV+ESTGVFTT + ASAHL+GGAK+VIISAPS DAPMFVVGV
Sbjct: 76  VHNERDPANIKWSASGAEYVIESTGVFTTKETASAHLKGGAKRVIISAPSKDAPMFVVGV 135

Query: 439 NLEAYDPSFKVISNASCTTNCLAHLQRL 522
           NLE ++PS KVISNASCTTNCLA L ++
Sbjct: 136 NLEKFNPSEKVISNASCTTNCLAPLAKV 163



 Score =  108 bits (260), Expect = 7e-25
 Identities = 55/78 (70%), Positives = 57/78 (73%)
 Frame = +3

Query: 507 PLAKVIHDNFEIVEGLMXXXXXXXXXXXXXDGPSGKLWRDGRGAQQNIIPASTGAAKAVG 686
           PLAKVI+D F I EGLM             DGPS K WR GRGA  NIIP+STGAAKAVG
Sbjct: 159 PLAKVINDTFGIEEGLMTTVHATTATQKTVDGPSKKDWRGGRGASANIIPSSTGAAKAVG 218

Query: 687 KVIPALNGKLTGMAFRVP 740
           KVIPALNGKLTGMAFRVP
Sbjct: 219 KVIPALNGKLTGMAFRVP 236



 Score =  104 bits (250), Expect = 1e-23
 Identities = 48/70 (68%), Positives = 59/70 (84%), Gaps = 1/70 (1%)
 Frame = +2

Query: 50  KIGINGFGRIGRLVLRASIEKGA-QVVAINDPFIGLDYMVYLFKYDSTHGRFKGSVEVQD 226
           K+GINGFGRIGR+VLR +I  G  QVVA+NDPFI LDYM Y+FKYDSTHGRF+GSVE + 
Sbjct: 5   KVGINGFGRIGRIVLRNAILTGKIQVVAVNDPFIDLDYMAYMFKYDSTHGRFEGSVETKG 64

Query: 227 GFLVVNGNKM 256
           G LV++G+ +
Sbjct: 65  GKLVIDGHSI 74


>SPBC32F12.11 |tdh1|gpd1|glyceraldehyde-3-phosphate dehydrogenase
           Tdh1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 336

 Score =  133 bits (321), Expect = 3e-32
 Identities = 62/88 (70%), Positives = 74/88 (84%)
 Frame = +1

Query: 259 VFSERDPKAIPWGKAGAEYVVESTGVFTTTDKASAHLEGGAKKVIISAPSADAPMFVVGV 438
           V +ERDP  I W  +GA+YV+ESTGVFTT + ASAHL+GGAK+VIISAPS DAPM+VVGV
Sbjct: 76  VHNERDPADIKWSTSGADYVIESTGVFTTQETASAHLKGGAKRVIISAPSKDAPMYVVGV 135

Query: 439 NLEAYDPSFKVISNASCTTNCLAHLQRL 522
           N E ++PS KVISNASCTTNCLA L ++
Sbjct: 136 NEEKFNPSEKVISNASCTTNCLAPLAKV 163



 Score =  109 bits (261), Expect = 5e-25
 Identities = 50/68 (73%), Positives = 59/68 (86%), Gaps = 1/68 (1%)
 Frame = +2

Query: 50  KIGINGFGRIGRLVLR-ASIEKGAQVVAINDPFIGLDYMVYLFKYDSTHGRFKGSVEVQD 226
           K+GINGFGRIGR+VLR A + K  QVVAINDPFI L+YM Y+FKYDSTHGRF GSVE++D
Sbjct: 5   KVGINGFGRIGRIVLRNALVAKTIQVVAINDPFIDLEYMAYMFKYDSTHGRFDGSVEIKD 64

Query: 227 GFLVVNGN 250
           G LV++GN
Sbjct: 65  GKLVIDGN 72



 Score =  108 bits (260), Expect = 7e-25
 Identities = 55/78 (70%), Positives = 57/78 (73%)
 Frame = +3

Query: 507 PLAKVIHDNFEIVEGLMXXXXXXXXXXXXXDGPSGKLWRDGRGAQQNIIPASTGAAKAVG 686
           PLAKVI+D F I EGLM             DGPS K WR GRGA  NIIP+STGAAKAVG
Sbjct: 159 PLAKVINDTFGIEEGLMTTVHATTATQKTVDGPSKKDWRGGRGASANIIPSSTGAAKAVG 218

Query: 687 KVIPALNGKLTGMAFRVP 740
           KVIPALNGKLTGMAFRVP
Sbjct: 219 KVIPALNGKLTGMAFRVP 236


>SPBC660.13c |ssb1|rpa1, rad11|DNA replication factor A subunit Ssb1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 609

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 18/86 (20%), Positives = 45/86 (52%), Gaps = 6/86 (6%)
 Frame = +2

Query: 32  LADNMSKIGINGFGRIGRLVLRASIEKGAQVVAINDPFIGLD------YMVYLFKYDSTH 193
           + D+  ++ +N F  +G+L++  + ++    +  ND    ++      YM Y+F+  +  
Sbjct: 515 VGDHTGQLWLNVFDDVGKLIMHKTADE-LNDLQENDENAFMNCMAEACYMPYIFQCRAKQ 573

Query: 194 GRFKGSVEVQDGFLVVNGNKMPFSQK 271
             FKG + V+  + V++ N+M + ++
Sbjct: 574 DNFKGEMRVR--YTVMSINQMDWKEE 597


>SPBC30B4.04c |sol1||SWI/SNF complex subunit
           Sol1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 865

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 23/67 (34%), Positives = 32/67 (47%), Gaps = 1/67 (1%)
 Frame = -3

Query: 369 QVSRCFICSGKDTSRLYNIFSPSFSPWNGLRVPF*ENGILLPLTTRNPS*T-STLPLKRP 193
           Q+S+ FI    D +R   +F  SFSP+N  +     N     L T  PS T +T P   P
Sbjct: 613 QLSQNFILPNVDVARHVLLFILSFSPFNRKKSKTILND---TLPTSIPSYTPATHPYAGP 669

Query: 192 WVESYLK 172
            + +Y K
Sbjct: 670 AINAYAK 676


>SPAC14C4.02c |smc5|spr18|Smc5-6 complex SMC subunit Smc5
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1065

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 17/53 (32%), Positives = 26/53 (49%), Gaps = 2/53 (3%)
 Frame = -1

Query: 635 TTAITP*FSRRSINSFLCS--SCGMNSSHQALNNFKVIMNNLCKWARQFVVQE 483
           T  IT   S+   +SF  +  +C  +S    ++ F V +NNLC +  Q  V E
Sbjct: 94  TVTITRQISQDKSSSFSINREACATSSITSLMDTFNVQLNNLCHFLPQDRVAE 146


>SPAC31A2.05c |mis4||cohesin loading factor Mis4|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1583

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 18/54 (33%), Positives = 28/54 (51%), Gaps = 3/54 (5%)
 Frame = -2

Query: 253 FVTVNNKESILNLNTALKTAMGGIILEKINHIVK---TDERVIYSDHLSSLFNR 101
           F  + N+ESIL+L   L +     + E I++IV+   +D R     HLS L  +
Sbjct: 339 FKKLQNEESILHLLNILHSIFEYTVPEAIDNIVQSKTSDARTSEIQHLSVLLQK 392


>SPBC106.04 |ada1||adenosine deaminase Ada1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 846

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = -1

Query: 539 FKVIMNNLCKWARQFVVQEAFEMTLKE 459
           +K+   ++C+ AR  V+Q  FE  LKE
Sbjct: 702 YKLSAVDMCELARNSVLQSGFERQLKE 728


>SPBC577.07 |ubp10||ubiquitin C-terminal hydrolase
           Ubp10|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 502

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 14/37 (37%), Positives = 19/37 (51%)
 Frame = +2

Query: 65  GFGRIGRLVLRASIEKGAQVVAINDPFIGLDYMVYLF 175
           GF RI    +R   EKG QVV   D  I  + + +L+
Sbjct: 298 GFVRIESQKIRQHAEKGEQVVFTGDRVIQTNVVPFLY 334


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,283,899
Number of Sequences: 5004
Number of extensions: 69812
Number of successful extensions: 219
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 211
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 217
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 355273338
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)