Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS31008
         (746 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    22   5.3  
AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    22   7.0  
AY569721-1|AAS86674.1|  400|Apis mellifera complementary sex det...    21   9.3  

>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 6/11 (54%), Positives = 7/11 (63%)
 Frame = +2

Query: 653 SCLYWCCQSCG 685
           SC  WCC + G
Sbjct: 10  SCCCWCCDNLG 20


>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 21.8 bits (44), Expect = 7.0
 Identities = 6/13 (46%), Positives = 10/13 (76%)
 Frame = +2

Query: 665 WCCQSCG*GYPCS 703
           + C++CG G+ CS
Sbjct: 204 YVCKACGKGFTCS 216


>AY569721-1|AAS86674.1|  400|Apis mellifera complementary sex
           determiner protein.
          Length = 400

 Score = 21.4 bits (43), Expect = 9.3
 Identities = 9/28 (32%), Positives = 17/28 (60%)
 Frame = -1

Query: 599 INSFLCSSCGMNSSHQALNNFKVIMNNL 516
           I S L +SC  ++++   NN+K +  N+
Sbjct: 303 IISSLSNSCNYSNNYYNNNNYKKLYYNI 330


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 219,728
Number of Sequences: 438
Number of extensions: 4727
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23388480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)