Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS31006
         (365 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1805.11c |rps2602|rps26-2|40S ribosomal protein S26|Schizosa...   134   4e-33
SPAC806.03c |rps2601|rps26-1, rps26|40S ribosomal protein S26|Sc...   130   9e-32
SPAC23H4.02 |ppk9||serine/threonine protein kinase Ppk9 |Schizos...    30   0.13 
SPAC3C7.01c ||SPAC732.03c|inositol polyphosphate phosphatase |Sc...    30   0.13 
SPCC126.15c |sec65||signal recognition particle subunit Sec65 |S...    29   0.30 
SPCC553.04 |cyp9||WD repeat containing cyclophilin family peptid...    26   1.6  
SPBC244.01c |sid4||SIN component scaffold protein Sid4 |Schizosa...    25   3.7  
SPBC17A3.01c |tim50|SPBC8D2.21c|TIM23 translocase complex subuni...    25   3.7  
SPBC409.12c |||nuclear telomere cap complex subunit Stn1|Schizos...    24   6.4  
SPBC1773.13 |||aromatic aminotransferase |Schizosaccharomyces po...    24   8.5  
SPCC10H11.01 |prp11||ATP-dependent RNA helicase Prp11|Schizosacc...    24   8.5  
SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces pom...    24   8.5  

>SPAC1805.11c |rps2602|rps26-2|40S ribosomal protein
           S26|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 119

 Score =  134 bits (324), Expect = 4e-33
 Identities = 59/85 (69%), Positives = 72/85 (84%)
 Frame = +1

Query: 1   GRAKHGRGHVKAVRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDINDASVYPMFQLPKLY 180
           GR KHGRGHVK VRC NC+R VPKDKAIK++ IRN+VE AA+RD+++ASVY  + +PKLY
Sbjct: 9   GRNKHGRGHVKFVRCINCSRAVPKDKAIKRWTIRNMVETAAIRDLSEASVYSEYTIPKLY 68

Query: 181 AKLHYCVSCAIHSKVVRNRSKKDRR 255
            KL YCVSCAIHS+VVR RS++ RR
Sbjct: 69  IKLQYCVSCAIHSRVVRVRSREGRR 93


>SPAC806.03c |rps2601|rps26-1, rps26|40S ribosomal protein
           S26|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 120

 Score =  130 bits (313), Expect = 9e-32
 Identities = 56/85 (65%), Positives = 71/85 (83%)
 Frame = +1

Query: 1   GRAKHGRGHVKAVRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDINDASVYPMFQLPKLY 180
           GR KHGRGH K VRC NC+R VPKDKAIK++ IRN+VE AA+RD+++ASVY  + +PK+Y
Sbjct: 9   GRNKHGRGHTKFVRCINCSRAVPKDKAIKRWNIRNMVETAAIRDLSEASVYSEYAIPKIY 68

Query: 181 AKLHYCVSCAIHSKVVRNRSKKDRR 255
            KL YCVSCAIH++VVR RS++ RR
Sbjct: 69  VKLQYCVSCAIHARVVRVRSREGRR 93


>SPAC23H4.02 |ppk9||serine/threonine protein kinase Ppk9
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 532

 Score = 29.9 bits (64), Expect = 0.13
 Identities = 21/81 (25%), Positives = 38/81 (46%), Gaps = 2/81 (2%)
 Frame = +1

Query: 70  KDKAIKKFVIRNIVEAAAVRDINDASVYPMFQLPKLYAKLHYCVSCAIHSKVVR-NR-SK 243
           +DK   K + R +     +   N  ++Y +F++PK        +   +HS VV+ NR  +
Sbjct: 60  EDKDTWKRLQREVTILRQLHHPNIITLYQVFRVPKYTVLALEYMDTDLHSMVVKHNRLDE 119

Query: 244 KDRRSVLLPRVTSLGTCHVHR 306
              R +    V ++  CH+HR
Sbjct: 120 CTTRKIFRQIVHAIDYCHLHR 140


>SPAC3C7.01c ||SPAC732.03c|inositol polyphosphate phosphatase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 611

 Score = 29.9 bits (64), Expect = 0.13
 Identities = 14/63 (22%), Positives = 31/63 (49%)
 Frame = +1

Query: 97  IRNIVEAAAVRDINDASVYPMFQLPKLYAKLHYCVSCAIHSKVVRNRSKKDRRSVLLPRV 276
           + N ++ +   D N+  +Y   +L K+Y  +    SC +H+ ++ N   + R+  + P  
Sbjct: 34  LSNSLDLSKTPDYNNVQLYGFIRL-KIYKYVVLVTSCDLHAAILGNNIYRARKFAIFPIT 92

Query: 277 TSL 285
            +L
Sbjct: 93  RTL 95


>SPCC126.15c |sec65||signal recognition particle subunit Sec65
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 199

 Score = 28.7 bits (61), Expect = 0.30
 Identities = 15/26 (57%), Positives = 18/26 (69%)
 Frame = +1

Query: 58  RCVPKDKAIKKFVIRNIVEAAAVRDI 135
           RCVPKDKAI   + +NI  A  VRD+
Sbjct: 20  RCVPKDKAILNPLAKNI--ADVVRDL 43


>SPCC553.04 |cyp9||WD repeat containing cyclophilin family
           peptidyl-prolyl cis-trans isomerase
           Cyp9|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 610

 Score = 26.2 bits (55), Expect = 1.6
 Identities = 11/39 (28%), Positives = 24/39 (61%)
 Frame = -3

Query: 117 RFYDVPNHELFDSLVLWHAPRAVCASHSFNVTTSMLGAS 1
           + +DV + +L + + L   P+A+C  +S ++ TS++  S
Sbjct: 115 KVFDVESIDLVNIIDLEFLPKAICCFNSPSLKTSLIAVS 153


>SPBC244.01c |sid4||SIN component scaffold protein Sid4
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 660

 Score = 25.0 bits (52), Expect = 3.7
 Identities = 9/30 (30%), Positives = 17/30 (56%)
 Frame = +3

Query: 213 PQQSCQEQIEERQKIRTPPKSNFPRDMSRP 302
           P+   Q+  E ++ ++ PP  N P  ++RP
Sbjct: 194 PEVFNQQSKETKKSLQVPPSRNVPPPVTRP 223


>SPBC17A3.01c |tim50|SPBC8D2.21c|TIM23 translocase complex subunit
           Tim50 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 452

 Score = 25.0 bits (52), Expect = 3.7
 Identities = 8/29 (27%), Positives = 20/29 (68%)
 Frame = +3

Query: 192 LLRVMRHPQQSCQEQIEERQKIRTPPKSN 278
           +  ++ HP++  Q+Q+E+ Q+ +  P++N
Sbjct: 421 IFNLLFHPEEVQQQQLEQMQQQQFSPETN 449


>SPBC409.12c |||nuclear telomere cap complex subunit
           Stn1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 325

 Score = 24.2 bits (50), Expect = 6.4
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = +3

Query: 204 MRHPQQSCQEQIEERQKIRTPPKSNFPRDMSR 299
           MR+ +   +        IRTP KS FP+D ++
Sbjct: 140 MRYKKNLTKISKNHHSIIRTPKKSYFPKDHAK 171


>SPBC1773.13 |||aromatic aminotransferase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 481

 Score = 23.8 bits (49), Expect = 8.5
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -3

Query: 123 RRRFYDVPNHELFDSLVLWHAPRA 52
           R  F +V N  L +S+ ++H PRA
Sbjct: 363 RNAFLNVANKYLPNSVCIYHVPRA 386


>SPCC10H11.01 |prp11||ATP-dependent RNA helicase
           Prp11|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1014

 Score = 23.8 bits (49), Expect = 8.5
 Identities = 24/74 (32%), Positives = 34/74 (45%), Gaps = 1/74 (1%)
 Frame = +1

Query: 64  VPKDKAIKKFVIRNIVEAAAVRDINDASVYPMFQLPKLYAKLHYCVSCAIHSKVVRNRSK 243
           +PKDKA++    RN  +  A   I DA         KL A+L   V     SK  +  SK
Sbjct: 167 IPKDKAVENNHQRNAEKPVASDKITDA---------KLLARLER-VRAWKESKAKQEASK 216

Query: 244 KDRRSV-LLPRVTS 282
           K+   +   P+VT+
Sbjct: 217 KEEHKLNTKPQVTA 230


>SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1562

 Score = 23.8 bits (49), Expect = 8.5
 Identities = 11/32 (34%), Positives = 15/32 (46%)
 Frame = +1

Query: 52   CARCVPKDKAIKKFVIRNIVEAAAVRDINDAS 147
            C R  P  KA+    +RN +E A    I D +
Sbjct: 1214 CCRSSPMQKALMVQKVRNTLEKAVTLAIGDGA 1245


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,196,703
Number of Sequences: 5004
Number of extensions: 18732
Number of successful extensions: 46
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 45
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 46
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 114084208
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)