Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS31006
         (365 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_1177 + 35147036-35147038,35147128-35147220,35147322-351474...   134   3e-32
05_03_0555 + 15425486-15426856                                         28   2.0  
01_06_1377 + 36764461-36765339                                         28   2.6  
04_04_0656 - 26988766-26988830,26989311-26989371,26989514-269895...    27   3.4  
08_02_1601 - 28138206-28138597,28138928-28139054,28139150-281399...    27   4.5  
09_04_0525 + 18326429-18326780,18327870-18328068,18328597-18329458     27   6.0  
05_01_0554 + 4856131-4856605,4858051-4858098,4860611-4860792,486...    27   6.0  
04_03_0318 + 14296001-14296630                                         27   6.0  
04_03_0317 + 14292003-14292632                                         27   6.0  

>01_06_1177 +
           35147036-35147038,35147128-35147220,35147322-35147406,
           35147588-35147760
          Length = 117

 Score =  134 bits (323), Expect = 3e-32
 Identities = 56/85 (65%), Positives = 73/85 (85%)
 Frame = +1

Query: 1   GRAKHGRGHVKAVRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDINDASVYPMFQLPKLY 180
           GR KHGRGHVK +RC+NCA+C PKDKAIK+F +RNIVE AA+RD+ +A V+  + LPKLY
Sbjct: 9   GRNKHGRGHVKYIRCSNCAKCCPKDKAIKRFQVRNIVEQAAIRDVQEACVHDGYVLPKLY 68

Query: 181 AKLHYCVSCAIHSKVVRNRSKKDRR 255
           AK+H+CVSCAIH+ +VR RS+++RR
Sbjct: 69  AKVHHCVSCAIHAHIVRVRSRENRR 93


>05_03_0555 + 15425486-15426856
          Length = 456

 Score = 28.3 bits (60), Expect = 2.0
 Identities = 28/101 (27%), Positives = 42/101 (41%), Gaps = 6/101 (5%)
 Frame = +1

Query: 13  HGRGHVKAVRCTNCARCVPKDKAIKKFVI----RNIVEAAAVRDINDASVYP-MFQLPKL 177
           HGR  V +       + + KDK  K  ++    R I     VR  N   +Y  M    K+
Sbjct: 30  HGRNIVTSQSVA--IKVIDKDKIFKVGLMDQIKREISVMKLVRHPNIVQLYEVMATKSKI 87

Query: 178 YAKLHYCVSCAIHSKVVRNRSKKD-RRSVLLPRVTSLGTCH 297
           Y  L Y     + +KV + R K+D  R      V+++  CH
Sbjct: 88  YFVLEYVKGGELFNKVAKGRLKEDAARKYFQQLVSAVDFCH 128


>01_06_1377 + 36764461-36765339
          Length = 292

 Score = 27.9 bits (59), Expect = 2.6
 Identities = 16/50 (32%), Positives = 25/50 (50%)
 Frame = +3

Query: 153 PNVPAP*VIR*APLLRVMRHPQQSCQEQIEERQKIRTPPKSNFPRDMSRP 302
           P+ PA  +I   PLLR    PQ   + ++  R++   PP+  +P   S P
Sbjct: 121 PDSPASALIT-LPLLRPSGRPQGKLRIRLALRERSPPPPEPQYPPPSSSP 169


>04_04_0656 -
           26988766-26988830,26989311-26989371,26989514-26989588,
           26989694-26989849,26989975-26990061,26990140-26990340,
           26990942-26991043,26991223-26991374,26991488-26991557,
           26991646-26991765,26992708-26992761
          Length = 380

 Score = 27.5 bits (58), Expect = 3.4
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = +3

Query: 228 QEQIEERQKIRTPPKSNFPRDMSRP 302
           QE + ERQKI  PP  +    M++P
Sbjct: 261 QEMVSERQKIEAPPTPSAENYMAQP 285


>08_02_1601 -
           28138206-28138597,28138928-28139054,28139150-28139914,
           28140714-28140929,28141433-28141903
          Length = 656

 Score = 27.1 bits (57), Expect = 4.5
 Identities = 13/39 (33%), Positives = 21/39 (53%)
 Frame = -3

Query: 144 GIVNISDRRRFYDVPNHELFDSLVLWHAPRAVCASHSFN 28
           GI  + D   +YD  +  LF+ L+    P A  +SH+F+
Sbjct: 439 GIDMVDDGMPYYDAMDDNLFNDLLSSVQPSAGSSSHAFS 477


>09_04_0525 + 18326429-18326780,18327870-18328068,18328597-18329458
          Length = 470

 Score = 26.6 bits (56), Expect = 6.0
 Identities = 14/41 (34%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
 Frame = +1

Query: 205 CAIHSKVVRNRSKKDR-RSVLLPRVTSLGTCHVHRQCKGSD 324
           C I    +RN  K+ +  S  +  + SLG  HVH +   SD
Sbjct: 266 CCIFKFSIRNHKKQKKCHSKKIGSIPSLGGSHVHPEILASD 306


>05_01_0554 +
           4856131-4856605,4858051-4858098,4860611-4860792,
           4861409-4863136
          Length = 810

 Score = 26.6 bits (56), Expect = 6.0
 Identities = 10/15 (66%), Positives = 11/15 (73%)
 Frame = -3

Query: 126 DRRRFYDVPNHELFD 82
           DR  FYD PN+E FD
Sbjct: 354 DRTLFYDEPNYEAFD 368


>04_03_0318 + 14296001-14296630
          Length = 209

 Score = 26.6 bits (56), Expect = 6.0
 Identities = 14/35 (40%), Positives = 19/35 (54%)
 Frame = +1

Query: 214 HSKVVRNRSKKDRRSVLLPRVTSLGTCHVHRQCKG 318
           H K+V +R KK R   L+P   SL +  V  Q +G
Sbjct: 142 HLKIVNDRLKKLREEGLIPASVSLSSTEVPIQREG 176


>04_03_0317 + 14292003-14292632
          Length = 209

 Score = 26.6 bits (56), Expect = 6.0
 Identities = 14/35 (40%), Positives = 19/35 (54%)
 Frame = +1

Query: 214 HSKVVRNRSKKDRRSVLLPRVTSLGTCHVHRQCKG 318
           H K+V +R KK R   L+P   SL +  V  Q +G
Sbjct: 142 HLKIVNDRLKKLREEGLIPASVSLSSTEVPIQREG 176


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,699,518
Number of Sequences: 37544
Number of extensions: 152723
Number of successful extensions: 387
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 382
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 387
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 564709324
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)