Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS31006
         (365 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z92834-4|CAB07387.1|  117|Caenorhabditis elegans Hypothetical pr...   144   2e-35
AL132904-23|CAC35839.2|  312|Caenorhabditis elegans Hypothetical...    31   0.33 
AL132904-7|CAC35838.1|  430|Caenorhabditis elegans Hypothetical ...    31   0.33 
Z66561-4|CAA91457.2|  185|Caenorhabditis elegans Hypothetical pr...    27   5.4  
Z81491-2|CAB04020.1|  181|Caenorhabditis elegans Hypothetical pr...    26   7.2  
AC006708-26|AAF60419.1| 1724|Caenorhabditis elegans Holocentric ...    26   7.2  
AC006708-25|AAK68883.1| 1758|Caenorhabditis elegans Holocentric ...    26   7.2  
AF016416-8|AAB65271.1|  388|Caenorhabditis elegans Hypothetical ...    26   9.5  

>Z92834-4|CAB07387.1|  117|Caenorhabditis elegans Hypothetical
           protein F39B2.6 protein.
          Length = 117

 Score =  144 bits (349), Expect = 2e-35
 Identities = 64/85 (75%), Positives = 71/85 (83%)
 Frame = +1

Query: 1   GRAKHGRGHVKAVRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDINDASVYPMFQLPKLY 180
           GR K  RGHV  +RCTNC RC PKDKAIKKFV+RNIVEAAAVRDI DAS Y  + LPKLY
Sbjct: 9   GRNKKNRGHVAFIRCTNCGRCCPKDKAIKKFVVRNIVEAAAVRDIGDASAYTQYALPKLY 68

Query: 181 AKLHYCVSCAIHSKVVRNRSKKDRR 255
            KLHYC++CAIHSKVVRNRS++ RR
Sbjct: 69  HKLHYCIACAIHSKVVRNRSREARR 93


>AL132904-23|CAC35839.2|  312|Caenorhabditis elegans Hypothetical
           protein Y111B2A.10b protein.
          Length = 312

 Score = 30.7 bits (66), Expect = 0.33
 Identities = 23/91 (25%), Positives = 41/91 (45%), Gaps = 2/91 (2%)
 Frame = +1

Query: 25  HVKAVRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDINDASVYPMFQL-PKLYAKLHYCV 201
           H+K ++C NC+     +K+++  +IR+  E A   ++  A      +L P    K H   
Sbjct: 80  HLKEIQCDNCSLVFQSEKSLQSHIIRHHQEDADELEVWKAPCSICKELFPSTSVKTHEWY 139

Query: 202 SCAIHSKVV-RNRSKKDRRSVLLPRVTSLGT 291
            C    K++ + R  K  +   LP   +L T
Sbjct: 140 -CKNREKIIEKQRVSKILKVQSLPSSPALST 169


>AL132904-7|CAC35838.1|  430|Caenorhabditis elegans Hypothetical
           protein Y111B2A.10a protein.
          Length = 430

 Score = 30.7 bits (66), Expect = 0.33
 Identities = 23/91 (25%), Positives = 41/91 (45%), Gaps = 2/91 (2%)
 Frame = +1

Query: 25  HVKAVRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDINDASVYPMFQL-PKLYAKLHYCV 201
           H+K ++C NC+     +K+++  +IR+  E A   ++  A      +L P    K H   
Sbjct: 198 HLKEIQCDNCSLVFQSEKSLQSHIIRHHQEDADELEVWKAPCSICKELFPSTSVKTHEWY 257

Query: 202 SCAIHSKVV-RNRSKKDRRSVLLPRVTSLGT 291
            C    K++ + R  K  +   LP   +L T
Sbjct: 258 -CKNREKIIEKQRVSKILKVQSLPSSPALST 287


>Z66561-4|CAA91457.2|  185|Caenorhabditis elegans Hypothetical
           protein F08G12.5 protein.
          Length = 185

 Score = 26.6 bits (56), Expect = 5.4
 Identities = 24/82 (29%), Positives = 41/82 (50%), Gaps = 11/82 (13%)
 Frame = +1

Query: 58  RCVPKD--KAIKKFVIRNIVEAAA----VRDINDASVYPMFQ-LPKL----YAKLHYCVS 204
           R +PKD  KA KK V++++ EA      V  +  A    +FQ +P+     ++  H C+ 
Sbjct: 7   RFIPKDDKKADKKRVLKSLDEADVCVVDVETLRCAVCLNIFQGIPQTLTCGHSFCHRCIE 66

Query: 205 CAIHSKVVRNRSKKDRRSVLLP 270
              HS+V+ +  + +R S   P
Sbjct: 67  EVAHSEVMNDTREPNRNSFHCP 88


>Z81491-2|CAB04020.1|  181|Caenorhabditis elegans Hypothetical
           protein D1086.2 protein.
          Length = 181

 Score = 26.2 bits (55), Expect = 7.2
 Identities = 12/48 (25%), Positives = 23/48 (47%)
 Frame = +1

Query: 103 NIVEAAAVRDINDASVYPMFQLPKLYAKLHYCVSCAIHSKVVRNRSKK 246
           N++    +RD N   +   ++L  +   L YC+   +++  V NR  K
Sbjct: 82  NVITCKKLRDKNRNVIKQCYELDLVGTPLSYCIQRKLNADKVANRCVK 129


>AC006708-26|AAF60419.1| 1724|Caenorhabditis elegans Holocentric
            chromosome bindingprotein protein 6, isoform a protein.
          Length = 1724

 Score = 26.2 bits (55), Expect = 7.2
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +3

Query: 228  QEQIEERQKIRTPPKSNFPRDMSR 299
            QE +EE  ++RTP K N   D+ R
Sbjct: 1416 QENVEEEVEMRTPQKKNPDADVPR 1439


>AC006708-25|AAK68883.1| 1758|Caenorhabditis elegans Holocentric
            chromosome bindingprotein protein 6, isoform b protein.
          Length = 1758

 Score = 26.2 bits (55), Expect = 7.2
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +3

Query: 228  QEQIEERQKIRTPPKSNFPRDMSR 299
            QE +EE  ++RTP K N   D+ R
Sbjct: 1416 QENVEEEVEMRTPQKKNPDADVPR 1439


>AF016416-8|AAB65271.1|  388|Caenorhabditis elegans Hypothetical
           protein F29A7.1 protein.
          Length = 388

 Score = 25.8 bits (54), Expect = 9.5
 Identities = 13/41 (31%), Positives = 19/41 (46%)
 Frame = +1

Query: 28  VKAVRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDINDASV 150
           V   R  N   C+   K IK+F ++ I  AA  R + +  V
Sbjct: 129 VSVYRTMNEGNCINASKVIKEFRVKTIRLAACSRSLEEKIV 169


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,868,510
Number of Sequences: 27780
Number of extensions: 116630
Number of successful extensions: 331
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 322
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 331
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 514188384
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)