Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS31006
         (365 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             21   4.6  
DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    21   6.0  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    21   6.0  
AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cycl...    20   8.0  

>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.0 bits (42), Expect = 4.6
 Identities = 8/20 (40%), Positives = 14/20 (70%)
 Frame = +3

Query: 207 RHPQQSCQEQIEERQKIRTP 266
           + PQQ  Q+Q +++Q+ R P
Sbjct: 839 QQPQQQQQQQQQQQQQQRGP 858


>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 20.6 bits (41), Expect = 6.0
 Identities = 9/29 (31%), Positives = 16/29 (55%)
 Frame = +3

Query: 168 P*VIR*APLLRVMRHPQQSCQEQIEERQK 254
           P V++   LL  + HP +  Q ++  R+K
Sbjct: 3   PGVLKLLVLLTFLLHPSRCTQGKVNYREK 31


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 20.6 bits (41), Expect = 6.0
 Identities = 9/29 (31%), Positives = 16/29 (55%)
 Frame = +3

Query: 168 P*VIR*APLLRVMRHPQQSCQEQIEERQK 254
           P V++   LL  + HP +  Q ++  R+K
Sbjct: 3   PGVLKLLVLLTFLLHPSRCTQGKVNYREK 31


>AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cyclase
           alpha 1 subunit protein.
          Length = 699

 Score = 20.2 bits (40), Expect = 8.0
 Identities = 5/8 (62%), Positives = 7/8 (87%)
 Frame = +1

Query: 193 YCVSCAIH 216
           YCV+C +H
Sbjct: 542 YCVACGLH 549


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 81,782
Number of Sequences: 438
Number of extensions: 1578
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  8680350
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)