Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS31005
(623 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC31H12.04c |rpl1202|rpl12-2|60S ribosomal protein L12.1/L12A|... 123 2e-29
SPCC16C4.13c |rpl1201|rpl12-1, rpl12.1|60S ribosomal protein L12... 123 2e-29
SPAPB21F2.02 |||Dopey family protein|Schizosaccharomyces pombe|c... 29 0.72
SPAPB21F2.03 |||ribosome biogenesis protein |Schizosaccharomyces... 28 0.95
SPBC216.02 |mcp5|num1, mug21|cortical anchoring factor for dynei... 26 3.8
SPBC725.14 |arg6||acetylglutamate synthase Arg6 |Schizosaccharom... 25 8.9
SPBC3D6.11c |slx8||ubiquitin-protein ligase E3 Slx8 |Schizosacch... 25 8.9
>SPCC31H12.04c |rpl1202|rpl12-2|60S ribosomal protein
L12.1/L12A|Schizosaccharomyces pombe|chr 3|||Manual
Length = 165
Score = 123 bits (296), Expect = 2e-29
Identities = 55/86 (63%), Positives = 77/86 (89%)
Frame = +3
Query: 255 KGLKITVQLTVQNRQAQIAVVPSAAALIIRALKEPPRDRKKQKNIKHNGNISLEDVIGIA 434
KGL++TV+LT+QNRQA ++VVPSA+AL+I+ALKEP RDRKK KN+ H+GN+SL+++I +A
Sbjct: 54 KGLRVTVKLTIQNRQAAVSVVPSASALVIKALKEPARDRKKDKNVAHSGNVSLDEIIEVA 113
Query: 435 KIMRNRSMARYLSGSVKEILGTAQSL 512
+ MR +S+A+ LSG+VKEILGTA S+
Sbjct: 114 RTMRFKSLAKELSGTVKEILGTAFSV 139
Score = 90.2 bits (214), Expect = 2e-19
Identities = 40/52 (76%), Positives = 45/52 (86%)
Frame = +1
Query: 97 MPPKFDPNEIKIVNLRCVGGEVGATSSLAPKIGPLGLSPKKVGDDIAKATSD 252
MPPKFDPNE+K + +R VGGEV S+LAPKIGPLGLSPKKVG+DIAKAT D
Sbjct: 1 MPPKFDPNEVKTIFMRAVGGEVAGGSTLAPKIGPLGLSPKKVGEDIAKATKD 52
Score = 31.5 bits (68), Expect = 0.10
Identities = 11/20 (55%), Positives = 17/20 (85%)
Frame = +2
Query: 509 VGCTVEGRPPHDLIDDINSG 568
VGCTV+G+ PHD+ +I++G
Sbjct: 139 VGCTVDGKNPHDVQKEIDNG 158
>SPCC16C4.13c |rpl1201|rpl12-1, rpl12.1|60S ribosomal protein
L12.1/L12A|Schizosaccharomyces pombe|chr 3|||Manual
Length = 165
Score = 123 bits (296), Expect = 2e-29
Identities = 55/86 (63%), Positives = 77/86 (89%)
Frame = +3
Query: 255 KGLKITVQLTVQNRQAQIAVVPSAAALIIRALKEPPRDRKKQKNIKHNGNISLEDVIGIA 434
KGL++TV+LT+QNRQA ++VVPSA+AL+I+ALKEP RDRKK KN+ H+GN+SL+++I +A
Sbjct: 54 KGLRVTVKLTIQNRQAAVSVVPSASALVIKALKEPARDRKKDKNVAHSGNVSLDEIIEVA 113
Query: 435 KIMRNRSMARYLSGSVKEILGTAQSL 512
+ MR +S+A+ LSG+VKEILGTA S+
Sbjct: 114 RTMRFKSLAKELSGTVKEILGTAFSV 139
Score = 90.2 bits (214), Expect = 2e-19
Identities = 40/52 (76%), Positives = 45/52 (86%)
Frame = +1
Query: 97 MPPKFDPNEIKIVNLRCVGGEVGATSSLAPKIGPLGLSPKKVGDDIAKATSD 252
MPPKFDPNE+K + +R VGGEV S+LAPKIGPLGLSPKKVG+DIAKAT D
Sbjct: 1 MPPKFDPNEVKTIFMRAVGGEVAGGSTLAPKIGPLGLSPKKVGEDIAKATKD 52
Score = 31.5 bits (68), Expect = 0.10
Identities = 11/20 (55%), Positives = 17/20 (85%)
Frame = +2
Query: 509 VGCTVEGRPPHDLIDDINSG 568
VGCTV+G+ PHD+ +I++G
Sbjct: 139 VGCTVDGKNPHDVQKEIDNG 158
>SPAPB21F2.02 |||Dopey family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1687
Score = 28.7 bits (61), Expect = 0.72
Identities = 16/36 (44%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
Frame = -2
Query: 499 VPRISFTEPERYRAIDLFLMIFAIPI-TSSREMLPL 395
V R+ ++PE DLFL I A+ + TSS+ +LPL
Sbjct: 1475 VKRLITSDPEGVLKKDLFLFIRALALRTSSKHLLPL 1510
>SPAPB21F2.03 |||ribosome biogenesis protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 172
Score = 28.3 bits (60), Expect = 0.95
Identities = 19/85 (22%), Positives = 35/85 (41%)
Frame = +3
Query: 264 KITVQLTVQNRQAQIAVVPSAAALIIRALKEPPRDRKKQKNIKHNGNISLEDVIGIAKIM 443
K + Q ++ N + V ++ L LKE +D++K ++ S + A+
Sbjct: 23 KPSQQASIPNVELSSTVTSNSQVLNNDPLKETKKDKRKDRHFNWQQKFSNPKISASARKR 82
Query: 444 RNRSMARYLSGSVKEILGTAQSLDV 518
RNR L +V I +D+
Sbjct: 83 RNRKARENLKVNVSSIGEVLPEIDL 107
>SPBC216.02 |mcp5|num1, mug21|cortical anchoring factor for dynein
Mcp5/Num1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 968
Score = 26.2 bits (55), Expect = 3.8
Identities = 13/36 (36%), Positives = 18/36 (50%)
Frame = -1
Query: 377 LFTITRRLLKGSDDKGCCRGNNSYLGLSVLNCQLHS 270
+FT+ R LK + CR N + GLS C +S
Sbjct: 805 VFTLPRNNLKSKTNTKKCRDNLNLSGLSSSTCNANS 840
>SPBC725.14 |arg6||acetylglutamate synthase Arg6
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 500
Score = 25.0 bits (52), Expect = 8.9
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = -1
Query: 176 DDVAPTSPPTHRKFTILI 123
D++A T PP HRK IL+
Sbjct: 249 DELAKTLPPYHRKNLILV 266
>SPBC3D6.11c |slx8||ubiquitin-protein ligase E3 Slx8
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 269
Score = 25.0 bits (52), Expect = 8.9
Identities = 11/29 (37%), Positives = 16/29 (55%)
Frame = -3
Query: 555 SSIRSCGGLPSTVHPTTVLCQESLLLSQK 469
++ + C VHP V+C E +L SQK
Sbjct: 238 AATQKCPVCRRKVHPNKVICLEMMLGSQK 266
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,594,188
Number of Sequences: 5004
Number of extensions: 53743
Number of successful extensions: 142
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 132
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 142
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 275671126
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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