Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS31005
         (623 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    23   3.2  
AY217747-1|AAP45005.1|  246|Apis mellifera short-chain dehydroge...    21   7.4  
AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase ...    21   7.4  
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    21   7.4  
DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.          21   9.8  

>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 22.6 bits (46), Expect = 3.2
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = +2

Query: 470 FWLSKRDSWHSTVVGCTVEGRP 535
           +WL KR+   S+  G T++  P
Sbjct: 593 YWLEKREHRSSSTKGITIQEPP 614


>AY217747-1|AAP45005.1|  246|Apis mellifera short-chain
           dehydrogenase/reductase protein.
          Length = 246

 Score = 21.4 bits (43), Expect = 7.4
 Identities = 9/33 (27%), Positives = 18/33 (54%)
 Frame = +3

Query: 375 KQKNIKHNGNISLEDVIGIAKIMRNRSMARYLS 473
           K+K I +   +++ D  G+  +  NR+   YL+
Sbjct: 131 KKKGINNGIIVNINDASGLNLLPMNRNRPAYLA 163


>AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase
           protein.
          Length = 492

 Score = 21.4 bits (43), Expect = 7.4
 Identities = 6/9 (66%), Positives = 8/9 (88%)
 Frame = -3

Query: 39  VWIPQGYRL 13
           +W+PQ YRL
Sbjct: 131 IWVPQKYRL 139


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 21.4 bits (43), Expect = 7.4
 Identities = 6/9 (66%), Positives = 8/9 (88%)
 Frame = -3

Query: 39  VWIPQGYRL 13
           +W+PQ YRL
Sbjct: 131 IWVPQKYRL 139


>DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.
          Length = 495

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = +3

Query: 237 QGHK*LKGLKITVQL 281
           QGH  LKGLK ++ L
Sbjct: 269 QGHAILKGLKTSIIL 283


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 179,794
Number of Sequences: 438
Number of extensions: 3920
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18582456
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)