Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS31004
         (679 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3H1.02c |||metallopeptidase|Schizosaccharomyces pombe|chr 1|...    32   0.066
SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyce...    29   0.82 
SPAC23H4.04 |||tRNA|Schizosaccharomyces pombe|chr 1|||Manual           27   1.9  
SPBC18H10.05 |||WD repeat protein Wdr44 family, WD repeat protei...    27   3.3  
SPAP27G11.15 |slx1||structure-specific endonuclease catalytic su...    26   4.4  
SPBC1734.12c |alg12||dolichyl pyrophosphate Man7GlcNAc2 alpha-1,...    26   5.8  

>SPAC3H1.02c |||metallopeptidase|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1036

 Score = 32.3 bits (70), Expect = 0.066
 Identities = 24/85 (28%), Positives = 37/85 (43%), Gaps = 3/85 (3%)
 Frame = -3

Query: 539  LFSRDADRRPPGSFTCRWISCWLMPNSFXAMQMXTPV---SFRYSDTISSVPSDSTRVRP 369
            L   +  R P   F   +   +L P  F +    T +   S   SD + S+P  ++ + P
Sbjct: 775  LLDSECHRNPNMEFLSTFSKNYLKPQEFGSSSSLTVIPMPSNESSDLVFSIPGITSWLDP 834

Query: 368  SLPSIVISPFLQVILGGWFPWNIQR 294
            SLP IV+      ++ G F WN  R
Sbjct: 835  SLPVIVLIANYLGLMDGPF-WNTIR 858


>SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 983

 Score = 28.7 bits (61), Expect = 0.82
 Identities = 12/30 (40%), Positives = 22/30 (73%)
 Frame = -2

Query: 162 SQHLPSPRQSASSSHLVSQTLTGLVHSSVG 73
           ++H+PSPR++A+     SQ+  G ++SS+G
Sbjct: 446 TRHIPSPRENAARK--ASQSYIGPINSSIG 473


>SPAC23H4.04 |||tRNA|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 415

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 12/38 (31%), Positives = 22/38 (57%)
 Frame = +1

Query: 316 QPPKITWRKGEITIDGSEGRTRVLSDGTLEIVSLYRND 429
           QP K+TWR  E      + + R ++ G  +++++Y ND
Sbjct: 362 QPAKVTWRNPESVKIHFQDKQRAVTPG--QVIAVYVND 397


>SPBC18H10.05 |||WD repeat protein Wdr44 family, WD repeat
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 586

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 13/55 (23%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
 Frame = +1

Query: 292 LRCIFHGNQPPKITWRKGEITIDGSEGRT-RVLSDGTLEIVSLYRNDTGVYICIA 453
           L C+ H  +   I+W K +  +  S  RT R+    + + ++++R++  +  C+A
Sbjct: 249 LECVGHNAEVLSISWSKNDFLLTSSADRTVRLWHPKSTKSLAVFRHNE-IVTCVA 302


>SPAP27G11.15 |slx1||structure-specific endonuclease catalytic
           subunit |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 271

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = +2

Query: 563 GRPLVLRCLVYGYP 604
           GRP  + CLVYG+P
Sbjct: 52  GRPWSISCLVYGFP 65


>SPBC1734.12c |alg12||dolichyl pyrophosphate Man7GlcNAc2
           alpha-1,3-glucosyltransferase Alg12 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 546

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = -1

Query: 568 SAHLPRYYSFCSPAMPTGVLPDRSLAGGSPA 476
           S H+PR  S  +PA P  +L ++      PA
Sbjct: 459 SNHIPREISIRNPAQPVYILANKKARATKPA 489


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,568,390
Number of Sequences: 5004
Number of extensions: 48589
Number of successful extensions: 171
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 166
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 171
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 311890690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)