Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS31004
(679 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_0014 - 103808-103873,103925-104248 33 0.16
03_02_0752 - 10922456-10922644,10922719-10922796,10922888-109230... 32 0.37
11_01_0487 - 3763233-3763733,3763827-3764279,3765270-3765392,376... 31 0.85
06_01_1133 + 9364842-9364850,9364929-9365048,9365157-9365476,936... 31 0.85
02_05_1042 + 33718988-33720112,33720709-33721305,33721862-337222... 31 1.1
12_02_0980 - 25018107-25018469,25018792-25018938,25019028-25020110 30 2.0
03_02_0517 + 9054816-9055655 30 2.0
12_02_0122 + 13923510-13925081 29 2.6
07_03_1509 - 27246721-27247350 29 2.6
06_01_0874 - 6702059-6702733,6703146-6703521,6703677-6703770,670... 29 3.4
06_03_1189 + 28271185-28271394,28272421-28273326 29 4.5
02_01_0296 + 1978565-1981197,1981216-1981639,1982280-1982771,198... 28 6.0
04_04_1536 - 34207425-34207490,34207801-34208268,34208345-342084... 28 7.9
04_03_0643 + 18328807-18331969,18332560-18332627 28 7.9
04_01_0153 - 1767023-1768477 28 7.9
03_02_0565 - 9484045-9484335,9484621-9484686,9484790-9484867,948... 28 7.9
03_02_0444 - 8543426-8543635,8543945-8544151,8544293-8544400,854... 28 7.9
02_04_0546 - 23782400-23782599,23782744-23782830,23782923-237834... 28 7.9
>07_01_0014 - 103808-103873,103925-104248
Length = 129
Score = 33.5 bits (73), Expect = 0.16
Identities = 24/58 (41%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
Frame = +1
Query: 208 TAARAASSPAGQSRXRPEVNAAEGGKATLRC-IFHGNQPPKITWRKGEITIDGSEGRT 378
TAA A PAG +R R + A A C I + PP+I WR G T+ EGRT
Sbjct: 37 TAAVEARDPAGGNRPRTDPAAVA---ALSPCGIRSPSFPPQIRWRGGASTVVRPEGRT 91
>03_02_0752 -
10922456-10922644,10922719-10922796,10922888-10923016,
10923105-10923152,10923243-10923333,10923517-10923648,
10923869-10924086,10925121-10925271,10925360-10926009,
10926715-10926786,10926938-10926985,10927105-10927242,
10927750-10927756,10928064-10928212
Length = 699
Score = 32.3 bits (70), Expect = 0.37
Identities = 12/28 (42%), Positives = 16/28 (57%), Gaps = 2/28 (7%)
Frame = +2
Query: 107 CETKCDDDADCRGDGKCCER--GCSRLC 184
C+ C D C +G CCE+ GCS+ C
Sbjct: 456 CQQMCGKDCACVENGTCCEKYCGCSKSC 483
>11_01_0487 -
3763233-3763733,3763827-3764279,3765270-3765392,
3765822-3766122,3766283-3766644,3767117-3767713,
3768323-3769447
Length = 1153
Score = 31.1 bits (67), Expect = 0.85
Identities = 13/28 (46%), Positives = 16/28 (57%)
Frame = +2
Query: 533 RTKRIITGEMGRPLVLRCLVYGYPTPEI 616
R KR E+G P+VLRC Y P E+
Sbjct: 885 RQKRAFRAELGEPVVLRCQPYKIPLAEL 912
>06_01_1133 +
9364842-9364850,9364929-9365048,9365157-9365476,
9366267-9366428,9367151-9367235,9367352-9367501,
9367588-9367635,9367705-9367773,9367897-9368600,
9369426-9369561,9369636-9369856,9370355-9370486,
9371316-9371406,9371878-9371925,9372004-9372132,
9372357-9372626
Length = 897
Score = 31.1 bits (67), Expect = 0.85
Identities = 10/28 (35%), Positives = 16/28 (57%), Gaps = 2/28 (7%)
Frame = +2
Query: 107 CETKCDDDADCRGDGKCCER--GCSRLC 184
C++ C C +G CCE+ GC ++C
Sbjct: 653 CQSACGKQCPCLTNGTCCEKYCGCPKMC 680
>02_05_1042 +
33718988-33720112,33720709-33721305,33721862-33722223,
33722383-33722683,33723149-33723271,33723535-33723990,
33724102-33724602
Length = 1154
Score = 30.7 bits (66), Expect = 1.1
Identities = 13/28 (46%), Positives = 17/28 (60%)
Frame = +2
Query: 533 RTKRIITGEMGRPLVLRCLVYGYPTPEI 616
R KR + E+G P+VLRC Y P E+
Sbjct: 886 RQKRSLRPELGEPVVLRCQPYKIPLAEL 913
>12_02_0980 - 25018107-25018469,25018792-25018938,25019028-25020110
Length = 530
Score = 29.9 bits (64), Expect = 2.0
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = +1
Query: 346 EITIDGSEGRTRVLSDGTLEIVSLYRNDTG 435
E+ IDG EG T L+D L+ + +Y N G
Sbjct: 280 ELAIDGVEGSTFRLADTRLQTLRMYENQVG 309
>03_02_0517 + 9054816-9055655
Length = 279
Score = 29.9 bits (64), Expect = 2.0
Identities = 11/25 (44%), Positives = 17/25 (68%)
Frame = +1
Query: 307 HGNQPPKITWRKGEITIDGSEGRTR 381
+G P ++TW +G+ +DG EGR R
Sbjct: 229 NGVGPRRVTWPEGDGHVDGGEGRIR 253
>12_02_0122 + 13923510-13925081
Length = 523
Score = 29.5 bits (63), Expect = 2.6
Identities = 13/45 (28%), Positives = 24/45 (53%)
Frame = +1
Query: 478 QEIHLQVNDPGGRRSASRENKTNNNGGDGQTARLALPRVRIPDPG 612
++I ++ G R+ +S +NK ++ GG+G + LP D G
Sbjct: 303 EDIDCSIDLTGKRKKSSGDNKASDGGGEGSDDKPKLPTEADKDDG 347
>07_03_1509 - 27246721-27247350
Length = 209
Score = 29.5 bits (63), Expect = 2.6
Identities = 16/30 (53%), Positives = 19/30 (63%), Gaps = 6/30 (20%)
Frame = -2
Query: 573 SGLPISPVI------IRFVLPRCRPASSRI 502
S LP SPV+ + LPRCRPASSR+
Sbjct: 52 SPLPRSPVVSSHLPTVALSLPRCRPASSRL 81
>06_01_0874 -
6702059-6702733,6703146-6703521,6703677-6703770,
6705455-6705833
Length = 507
Score = 29.1 bits (62), Expect = 3.4
Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Frame = -3
Query: 437 TPVSFRYSDTISSVPSDS-TRVRPSLPSIVISPFLQVILG 321
+PV F DT+ + PS+S T R SL + +S ++LG
Sbjct: 276 SPVLFEIQDTVRTPPSESKTMKRASLYGLAMSAVFYLVLG 315
>06_03_1189 + 28271185-28271394,28272421-28273326
Length = 371
Score = 28.7 bits (61), Expect = 4.5
Identities = 20/77 (25%), Positives = 32/77 (41%), Gaps = 6/77 (7%)
Frame = +3
Query: 327 DHLEERRNHYRRQRGPDARAV----GRHAGDRVAVPEXXXXXXXXXXXXXXXQPAGD--P 488
D +R + RR+ +A A G H G + +PE + GD P
Sbjct: 256 DKRPDRMEYMRRELEAEAAAAWSWPGHHVGLDLNLPEPVLCDRGATAGEVLSEEEGDGAP 315
Query: 489 PASERSGRTPVGIAGEQ 539
P +++ R G+AGE+
Sbjct: 316 PPAKKRRRAVAGVAGEE 332
>02_01_0296 +
1978565-1981197,1981216-1981639,1982280-1982771,
1982950-1983087
Length = 1228
Score = 28.3 bits (60), Expect = 6.0
Identities = 18/49 (36%), Positives = 25/49 (51%)
Frame = -2
Query: 408 DLQRAVRQHARPALAAVDSDFSFPPSDLGRLVPVEYTAQRRLPALRRVH 262
D+ A+R A+ L D+ SD GRLV +EY+ R L +VH
Sbjct: 72 DVFGAIRSLAQFRLTGATKDYLVVGSDSGRLVILEYSPDRN--RLDKVH 118
>04_04_1536 -
34207425-34207490,34207801-34208268,34208345-34208485,
34208582-34208820,34209950-34210436
Length = 466
Score = 27.9 bits (59), Expect = 7.9
Identities = 14/39 (35%), Positives = 17/39 (43%), Gaps = 1/39 (2%)
Frame = +2
Query: 74 PTDEWTSPVSVCETKCDDDADC-RGDGKCCERGCSRLCV 187
PT P S + CDD+ C G CC G LC+
Sbjct: 371 PTPPTPPPPSAPDHVCDDNFSCPAGSTCCCAFGFRNLCL 409
>04_03_0643 + 18328807-18331969,18332560-18332627
Length = 1076
Score = 27.9 bits (59), Expect = 7.9
Identities = 15/25 (60%), Positives = 18/25 (72%), Gaps = 1/25 (4%)
Frame = +1
Query: 472 SQQEIHLQVNDPGGRRSAS-RENKT 543
SQQ+ HL DPGG SAS R+N+T
Sbjct: 38 SQQQQHLLQVDPGGVGSASARDNRT 62
>04_01_0153 - 1767023-1768477
Length = 484
Score = 27.9 bits (59), Expect = 7.9
Identities = 15/46 (32%), Positives = 25/46 (54%)
Frame = +1
Query: 475 QQEIHLQVNDPGGRRSASRENKTNNNGGDGQTARLALPRVRIPDPG 612
Q E++L + D RR A+R +++GG + AL +R+P G
Sbjct: 211 QAELYLPLIDERRRRMAARRRDRDDDGGTFRPYVDALIELRVPGDG 256
>03_02_0565 -
9484045-9484335,9484621-9484686,9484790-9484867,
9485005-9485157,9485271-9485356,9485445-9485551,
9485685-9485752,9485890-9485912,9487627-9487732,
9487772-9487899,9487989-9488065,9488126-9488131,
9488206-9488264
Length = 415
Score = 27.9 bits (59), Expect = 7.9
Identities = 20/59 (33%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Frame = -2
Query: 180 RRLHPRSQHLPSPRQSASSSHLVS-QTLTGLVHSSVGHDPLLFTSLHSVVFLKS*GKMG 7
R+LH + Q L +P SSS S Q + V S H FT++ +V++L+ G G
Sbjct: 312 RQLHQQIQILTAPYPGTSSSSASSQQQVVFSVLESCSHVMSFFTAIATVLWLQDAGGGG 370
>03_02_0444 -
8543426-8543635,8543945-8544151,8544293-8544400,
8544744-8544803,8544914-8544989,8545190-8545347,
8545479-8545541,8545653-8545737,8546423-8547438
Length = 660
Score = 27.9 bits (59), Expect = 7.9
Identities = 10/29 (34%), Positives = 17/29 (58%)
Frame = -1
Query: 91 RPLIRWTRSALVHQSAFGCVFEELREDGI 5
R + W R L+ +FG VFE + ++G+
Sbjct: 314 RKIRSWNRGMLLGSGSFGTVFEGISDEGV 342
>02_04_0546 -
23782400-23782599,23782744-23782830,23782923-23783442,
23783801-23784000,23784457-23784561,23784923-23785020,
23785168-23785271
Length = 437
Score = 27.9 bits (59), Expect = 7.9
Identities = 10/30 (33%), Positives = 18/30 (60%)
Frame = +1
Query: 475 QQEIHLQVNDPGGRRSASRENKTNNNGGDG 564
Q+ H +ND +A++ + ++NGGDG
Sbjct: 345 QESCHKDINDSSMISTATKRRQESSNGGDG 374
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,450,019
Number of Sequences: 37544
Number of extensions: 428155
Number of successful extensions: 1743
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 1676
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1743
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1726796312
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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