Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS31003
         (524 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F8.10c |stg1||SM22/transgelin-like actin modulating protein...    34   0.011
SPAC22H12.05c |||fasciclin domain protein |Schizosaccharomyces p...    31   0.14 
SPBC1105.18c ||SPBC887.21c|peptide release factor|Schizosaccharo...    27   2.3  
SPBC16C6.01c ||SPBC543.11c|lysine methyltransferase |Schizosacch...    26   3.0  
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha...    26   3.0  
SPCC1620.12c |||GTPase activating protein |Schizosaccharomyces p...    25   6.9  

>SPAC4F8.10c |stg1||SM22/transgelin-like actin modulating protein
           Stg1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 174

 Score = 34.3 bits (75), Expect = 0.011
 Identities = 19/32 (59%), Positives = 22/32 (68%), Gaps = 1/32 (3%)
 Frame = +2

Query: 74  IGPKEAEKNVRNFSEEQLRA-GQGVISLQYGS 166
           +GPK AEK  R FS +Q R   +GV SLQYGS
Sbjct: 119 LGPKLAEKKPRVFSAQQQREFREGVNSLQYGS 150


>SPAC22H12.05c |||fasciclin domain protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 728

 Score = 30.7 bits (66), Expect = 0.14
 Identities = 13/35 (37%), Positives = 22/35 (62%)
 Frame = +1

Query: 304 NFYILNNSHSLQKSLYLDSNNVGKNDILKIKDESF 408
           N+  L+N   L + +Y DSN+  K D+L+I +E +
Sbjct: 501 NYTTLSNKEFLIEGVYEDSNSRNKRDLLRINNEIY 535


>SPBC1105.18c ||SPBC887.21c|peptide release
           factor|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 162

 Score = 26.6 bits (56), Expect = 2.3
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = -1

Query: 260 CLNKPFKCARLDSFTCVSCYQS*FRFGW 177
           CLNK F   RL++F+C++  +  FR  W
Sbjct: 8   CLNKTFISVRLNAFSCLA--ELNFRHTW 33


>SPBC16C6.01c ||SPBC543.11c|lysine methyltransferase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 473

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 12/43 (27%), Positives = 21/43 (48%)
 Frame = -1

Query: 179 WRPYLNRTEEI*LPDQPGAAPRRSFARSSQLLSVLLTASRRFQ 51
           W  YLN  +E  +PD P     ++    + +L V+ T  R ++
Sbjct: 112 WNAYLNTLDETCMPDSPLLWKDKTCLEGTSMLDVINTNLRVYK 154


>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 4196

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 10/22 (45%), Positives = 18/22 (81%)
 Frame = -1

Query: 407  KDSSFIFKMSFLPTLLESKYRL 342
            K+ S+++K+S +P+LLES  +L
Sbjct: 1581 KERSYLYKVSNIPSLLESAAKL 1602


>SPCC1620.12c |||GTPase activating protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 595

 Score = 25.0 bits (52), Expect = 6.9
 Identities = 13/33 (39%), Positives = 22/33 (66%)
 Frame = +1

Query: 277 VTVLKFRRENFYILNNSHSLQKSLYLDSNNVGK 375
           +++LK R + F + NN+ S+Q+  YLD   +GK
Sbjct: 537 ISILKQRNQKF-LKNNATSIQQIQYLD-EELGK 567


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,995,786
Number of Sequences: 5004
Number of extensions: 39910
Number of successful extensions: 100
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 94
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 99
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 214353836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)