Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS31003
         (524 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_01_0400 - 3102325-3102519,3103009-3103455,3105063-3105500           29   1.7  
01_05_0749 + 24890944-24891146,24891414-24891535,24891633-248917...    29   2.3  
02_04_0454 + 23064081-23064139,23064297-23064366,23064553-230658...    27   7.0  
10_02_0189 - 6486737-6486916,6486988-6487260,6487364-6487576,648...    27   9.2  
01_06_0895 - 32804433-32804744,32804948-32805163,32805301-328056...    27   9.2  

>03_01_0400 - 3102325-3102519,3103009-3103455,3105063-3105500
          Length = 359

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 16/41 (39%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
 Frame = +2

Query: 32  QSLGRKAGTYGK-PSIGPKEAEKNVRNFSEEQLRAGQGVIS 151
           +S GRK   +   P+ G   AE +VRN S  QLR   G+++
Sbjct: 37  ESFGRKGLRFAADPATGAPTAELSVRNGSSLQLRLADGLVT 77


>01_05_0749 +
           24890944-24891146,24891414-24891535,24891633-24891721,
           24891813-24891848,24892268-24892367,24892524-24892566,
           24892645-24892739,24892978-24893036,24893114-24893613,
           24893691-24893772,24893864-24894429,24894520-24894655,
           24894750-24894812,24894942-24895172,24895282-24895395
          Length = 812

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 15/44 (34%), Positives = 27/44 (61%)
 Frame = +1

Query: 289 KFRRENFYILNNSHSLQKSLYLDSNNVGKNDILKIKDESFLFLP 420
           K+R  N  I + S S    ++ +SN++GK D ++ KDE+ + +P
Sbjct: 404 KYRNGNLVISSESLSHGLRIFQESNDLGK-DTVEAKDETEMVVP 446


>02_04_0454 +
           23064081-23064139,23064297-23064366,23064553-23065815,
           23065946-23066515
          Length = 653

 Score = 27.5 bits (58), Expect = 7.0
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = -1

Query: 128 GAAPRRSFARSSQLLSVLLTASRRFQPFCPVTASRSRR 15
           G      FAR  Q   +  +AS RF+ FC + A+R +R
Sbjct: 600 GGGDDEEFARRQQA-GLARSASLRFRAFCAIPAARPKR 636


>10_02_0189 -
           6486737-6486916,6486988-6487260,6487364-6487576,
           6489081-6489206
          Length = 263

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = +1

Query: 61  REAVNRTERS*EERAKLLRGAAPGWSGSHISSVRF 165
           RE+   T+    E A  +RG A GW    IS++ F
Sbjct: 14  RESFRHTQTRTREAAVHVRGGAAGWFVCEISTISF 48


>01_06_0895 -
           32804433-32804744,32804948-32805163,32805301-32805642,
           32805778-32806020,32806130-32806582,32806898-32807113,
           32808360-32808432,32808750-32808790,32809027-32809118,
           32809222-32809333,32810003-32810078,32810154-32810301,
           32811195-32811336,32812120-32812196,32813568-32813619
          Length = 864

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 15/36 (41%), Positives = 20/36 (55%)
 Frame = -3

Query: 399 VFYFQNVILTYIIGI*VQTFL*GMTVIKNVEVFAPK 292
           VF F + ILT+I G    T + G TVIK++     K
Sbjct: 577 VFDFPSEILTHITGYFSSTMIMGSTVIKSLTFHTTK 612


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,959,031
Number of Sequences: 37544
Number of extensions: 227207
Number of successful extensions: 510
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 504
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 510
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1154538620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)