Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS31003
         (524 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Y17704-1|CAA76824.2|  401|Anopheles gambiae hypothetical protein...    24   2.7  
AF080564-1|AAC31944.1|  372|Anopheles gambiae Sex combs reduced ...    24   3.6  
CR954257-12|CAJ14163.1| 1645|Anopheles gambiae putative cytoskel...    23   4.7  

>Y17704-1|CAA76824.2|  401|Anopheles gambiae hypothetical protein
           protein.
          Length = 401

 Score = 24.2 bits (50), Expect = 2.7
 Identities = 11/21 (52%), Positives = 16/21 (76%)
 Frame = +3

Query: 78  DRKKLRRTCETSPRSSSGLVR 140
           + +KLRRT E + +SS+ LVR
Sbjct: 337 ETEKLRRTVEQTGKSSAELVR 357


>AF080564-1|AAC31944.1|  372|Anopheles gambiae Sex combs reduced
           homeotic protein protein.
          Length = 372

 Score = 23.8 bits (49), Expect = 3.6
 Identities = 16/57 (28%), Positives = 25/57 (43%)
 Frame = +2

Query: 35  SLGRKAGTYGKPSIGPKEAEKNVRNFSEEQLRAGQGVISLQYGSNKGANQSGINFGN 205
           S G   G  G+P I PK +  +V       L++G    ++   S+   N S I+  N
Sbjct: 161 SSGANDGNNGRPEISPKLSPGSVVESVSRSLKSGNPSTAVS-SSSTNNNTSNISNRN 216


>CR954257-12|CAJ14163.1| 1645|Anopheles gambiae putative
           cytoskeletal structural protein protein.
          Length = 1645

 Score = 23.4 bits (48), Expect = 4.7
 Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
 Frame = +2

Query: 86  EAEKNVRNFSEEQLRAGQGVISLQYG-SNKGANQS 187
           EAE+N RN     LRA +  +S  +  SN G+  +
Sbjct: 318 EAERNARNAQHLLLRANRLTVSDNHNLSNSGSGNT 352


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 488,301
Number of Sequences: 2352
Number of extensions: 8943
Number of successful extensions: 28
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 28
length of database: 563,979
effective HSP length: 60
effective length of database: 422,859
effective search space used: 48205926
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)