Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS31002
         (774 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor ...    27   0.17 
EU019710-1|ABU25222.1|  475|Tribolium castaneum dopa decarboxyla...    21   8.3  
AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase ...    21   8.3  
AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase ...    21   8.3  
AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase ...    21   8.3  
AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase ...    21   8.3  

>AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor
           protein protein.
          Length = 585

 Score = 27.1 bits (57), Expect = 0.17
 Identities = 15/54 (27%), Positives = 22/54 (40%)
 Frame = +3

Query: 318 GRPLPESPLQRRRVCEINEHGDAMCNCIKDCPYETDSRRMVCTNFNETWQSDCE 479
           G     +P Q   VC I++ G  +C    DCP  T+         NE   + C+
Sbjct: 377 GYDCDSNPCQNGGVCRISDGGGYIC----DCPSGTNGTNCEIDTINECDSNPCK 426


>EU019710-1|ABU25222.1|  475|Tribolium castaneum dopa decarboxylase
           protein.
          Length = 475

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 10/36 (27%), Positives = 20/36 (55%), Gaps = 3/36 (8%)
 Frame = +2

Query: 596 SEMSDFPRRMRDWLFNIMRDMAERREL---TPHYLK 694
           ++  DF + M D++   + ++ +RR L    P YL+
Sbjct: 4   NQFKDFAKEMIDYVSGYLENIRDRRVLPTVEPGYLR 39


>AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase
           variant 2 protein.
          Length = 1558

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 10/27 (37%), Positives = 12/27 (44%)
 Frame = +1

Query: 421 QTPDAWCAQTSTKPGNRIAKYTASDAY 501
           Q  D W      + G R+    ASDAY
Sbjct: 837 QGEDRWLCTLLLQRGYRVEYSAASDAY 863


>AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase
           variant 1 protein.
          Length = 1558

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 10/27 (37%), Positives = 12/27 (44%)
 Frame = +1

Query: 421 QTPDAWCAQTSTKPGNRIAKYTASDAY 501
           Q  D W      + G R+    ASDAY
Sbjct: 837 QGEDRWLCTLLLQRGYRVEYSAASDAY 863


>AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase
           CHS1B protein.
          Length = 1558

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 10/27 (37%), Positives = 12/27 (44%)
 Frame = +1

Query: 421 QTPDAWCAQTSTKPGNRIAKYTASDAY 501
           Q  D W      + G R+    ASDAY
Sbjct: 837 QGEDRWLCTLLLQRGYRVEYSAASDAY 863


>AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase
           CHS1A protein.
          Length = 1558

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 10/27 (37%), Positives = 12/27 (44%)
 Frame = +1

Query: 421 QTPDAWCAQTSTKPGNRIAKYTASDAY 501
           Q  D W      + G R+    ASDAY
Sbjct: 837 QGEDRWLCTLLLQRGYRVEYSAASDAY 863


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 172,724
Number of Sequences: 336
Number of extensions: 3556
Number of successful extensions: 13
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 20857569
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)