Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS31002
(774 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_01_0423 + 3337401-3337419,3337777-3338235,3338650-3338735,333... 31 1.0
08_01_0539 + 4679392-4681282,4682060-4682104,4682403-4683560,468... 29 4.1
04_03_0582 + 17528335-17529790,17529913-17531651,17531814-175320... 29 5.4
03_02_0520 + 9092020-9092079,9092253-9093047 29 5.4
02_05_1345 + 35825552-35825834,35825914-35826022,35826098-358261... 29 5.4
01_06_1517 + 37920664-37920698,37922280-37922490 29 5.4
07_03_0908 + 22507565-22507810,22507925-22508872,22509314-225103... 26 6.0
12_01_0425 + 3347804-3348284,3348544-3348759,3349038-3349588,334... 28 7.2
11_06_0344 + 22540436-22540737,22541304-22543545 28 7.2
08_01_0961 - 9622444-9622928,9623011-9623102,9623862-9624002,962... 28 7.2
06_03_0948 - 26252230-26252460,26252567-26252614,26252703-262530... 28 7.2
06_01_0985 - 7646772-7647451,7647957-7648107 28 9.5
05_06_0246 + 26656629-26656907,26657001-26657228,26657595-266576... 28 9.5
04_01_0423 - 5597068-5597109,5597181-5597309,5597490-5598431 28 9.5
03_06_0537 + 34585339-34585581,34585668-34585862,34585964-34586845 28 9.5
01_06_1356 + 36627590-36627676,36627869-36628020,36628224-366284... 28 9.5
>12_01_0423 +
3337401-3337419,3337777-3338235,3338650-3338735,
3338974-3339022,3339225-3339533,3339555-3339710,
3339871-3340086,3340404-3340906,3341050-3341116,
3341215-3341272,3341561-3341699,3341840-3341956,
3342069-3342246,3342459-3343093
Length = 996
Score = 31.1 bits (67), Expect = 1.0
Identities = 14/37 (37%), Positives = 22/37 (59%)
Frame = +1
Query: 400 SRTVPTRQTPDAWCAQTSTKPGNRIAKYTASDAYASK 510
+R P QTPDA A + T+P ++ +A +AY +K
Sbjct: 380 TRIQPYTQTPDADSATSGTQPAAKLNSISAMEAYKAK 416
>08_01_0539 + 4679392-4681282,4682060-4682104,4682403-4683560,
4683834-4684204,4684290-4684835,4684927-4685027,
4685117-4685933,4686025-4686213,4686313-4686384,
4686477-4686587,4686647-4686652,4686694-4686794,
4687714-4687813,4687891-4687986,4688157-4688273,
4688367-4688492,4688566-4688619,4688745-4688992,
4689087-4689195,4689284-4689583,4689799-4689963
Length = 2240
Score = 29.1 bits (62), Expect = 4.1
Identities = 17/59 (28%), Positives = 30/59 (50%)
Frame = -1
Query: 330 ARVFHVDFFVFILFIRDLVEKVVNSAISASWYRFSSKLSDIPCSMCSASEMSPRPSCSD 154
AR+FH F+R V+ +++SA + SW+ ++K C S + P+ C+D
Sbjct: 1100 ARIFH--------FLRADVKSLISSAATCSWWNTAAKYYRSVCRFIDLSSLGPQ--CTD 1148
>04_03_0582 +
17528335-17529790,17529913-17531651,17531814-17532035,
17532062-17533525
Length = 1626
Score = 28.7 bits (61), Expect = 5.4
Identities = 13/37 (35%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Frame = +3
Query: 528 VRNTTTFKSSITERAEK-CLTALKARCLTSPVACGTG 635
+RN + + S+ E + C++ K + LT+PVA G G
Sbjct: 400 IRNLNSHQESLEESSSADCISPTKRKALTAPVAKGLG 436
>03_02_0520 + 9092020-9092079,9092253-9093047
Length = 284
Score = 28.7 bits (61), Expect = 5.4
Identities = 10/24 (41%), Positives = 18/24 (75%)
Frame = -3
Query: 205 VLDVFSLRDVPAAELLRRWTFSSR 134
VLD+ +++ +PA +L+RWT +R
Sbjct: 138 VLDLMNIKSLPAQYILKRWTREAR 161
>02_05_1345 +
35825552-35825834,35825914-35826022,35826098-35826137,
35827481-35827522,35827605-35827694,35828400-35828470,
35829375-35829463,35829583-35829652,35829898-35830048,
35830146-35830235,35830549-35830647
Length = 377
Score = 28.7 bits (61), Expect = 5.4
Identities = 13/56 (23%), Positives = 25/56 (44%)
Frame = +3
Query: 369 NEHGDAMCNCIKDCPYETDSRRMVCTNFNETWQSDCEVYRQRCLCLETLISAVVRN 536
N+H N + D ++ + C++ + CE+Y+ + C LI + V N
Sbjct: 167 NQHNSRELNGVPDLKTQSCVKLKKCSDCRFSAMQPCELYKSKSSCRHYLIVSAVTN 222
>01_06_1517 + 37920664-37920698,37922280-37922490
Length = 81
Score = 28.7 bits (61), Expect = 5.4
Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 3/48 (6%)
Frame = +2
Query: 395 LHQGLSL-RDRLQTHGVHKLQRNLAIGLRSIPP--AMLMPRNSDQCRG 529
LHQG++L R L +H L++ ++ P A+ P N QC+G
Sbjct: 23 LHQGVALSRLTLDMTSIHSAVHRLSVCVQHADPPDALTPPANPQQCKG 70
>07_03_0908 +
22507565-22507810,22507925-22508872,22509314-22510337,
22510425-22510477
Length = 756
Score = 25.8 bits (54), Expect(2) = 6.0
Identities = 9/28 (32%), Positives = 16/28 (57%)
Frame = -3
Query: 205 VLDVFSLRDVPAAELLRRWTFSSRGADP 122
VLD +++D+P L+RW ++ P
Sbjct: 611 VLDTRNIKDLPPQYFLKRWRKDAKSGSP 638
Score = 21.0 bits (42), Expect(2) = 6.0
Identities = 9/26 (34%), Positives = 10/26 (38%)
Frame = -3
Query: 391 HMASPCSLISQTRLRCSGLSGKGLPC 314
H SL S C G G+PC
Sbjct: 580 HFVKFDSLNSMVNCSCKGFEFVGIPC 605
>12_01_0425 +
3347804-3348284,3348544-3348759,3349038-3349588,
3349752-3349815,3349915-3349975,3350271-3350409,
3350561-3350677,3350794-3350971,3351218-3351828
Length = 805
Score = 28.3 bits (60), Expect = 7.2
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = +1
Query: 400 SRTVPTRQTPDAWCAQTSTKPGNRIAKYTASDAYASK 510
+R P QTPDA A + +P ++ +A +AY +K
Sbjct: 181 TRIQPYTQTPDADSATSGAQPTAKLDSISAMEAYKAK 217
>11_06_0344 + 22540436-22540737,22541304-22543545
Length = 847
Score = 28.3 bits (60), Expect = 7.2
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = +3
Query: 543 TFKSSITERAEKCLTALKARCLTSP 617
T +S ERAE+C + L RC+ P
Sbjct: 299 TLQSGFEERAEECFSQLVQRCIIRP 323
>08_01_0961 -
9622444-9622928,9623011-9623102,9623862-9624002,
9624460-9624506,9624581-9624639,9624780-9624940,
9625021-9625196,9625284-9625355,9625820-9625879,
9625997-9626191
Length = 495
Score = 28.3 bits (60), Expect = 7.2
Identities = 15/50 (30%), Positives = 21/50 (42%), Gaps = 1/50 (2%)
Frame = +3
Query: 516 ISAVVRNTTTFKSSITERA-EKCLTALKARCLTSPVACGTGFLTSCATWL 662
I + R K+S++ + C L C S CG F T CA +L
Sbjct: 299 IVKIARECGWRKTSVSSVCHDPCAICLDTECTVSAEGCGHEFCTKCALYL 348
>06_03_0948 -
26252230-26252460,26252567-26252614,26252703-26253041,
26253132-26253260,26255404-26255967
Length = 436
Score = 28.3 bits (60), Expect = 7.2
Identities = 19/74 (25%), Positives = 32/74 (43%)
Frame = +3
Query: 465 QSDCEVYRQRCLCLETLISAVVRNTTTFKSSITERAEKCLTALKARCLTSPVACGTGFLT 644
Q C + L L +L S V++ + + +RAE + R L + FL
Sbjct: 127 QIRCVITADEVLLLNSLDSYVLQYAAELQRRLLQRAEGDELPFEFRALELALEAACSFLD 186
Query: 645 SCATWLNVES*PLI 686
+ A L +E+ PL+
Sbjct: 187 AQAAELEIEAYPLL 200
>06_01_0985 - 7646772-7647451,7647957-7648107
Length = 276
Score = 27.9 bits (59), Expect = 9.5
Identities = 10/24 (41%), Positives = 17/24 (70%)
Frame = -3
Query: 205 VLDVFSLRDVPAAELLRRWTFSSR 134
VLDV +++ +P +L+RWT +R
Sbjct: 240 VLDVMNIKSLPKRYILKRWTREAR 263
>05_06_0246 +
26656629-26656907,26657001-26657228,26657595-26657630,
26658362-26658475,26658562-26659167
Length = 420
Score = 27.9 bits (59), Expect = 9.5
Identities = 13/27 (48%), Positives = 16/27 (59%)
Frame = -1
Query: 228 SSKLSDIPCSMCSASEMSPRPSCSDVG 148
S+ SD PC + SAS S P+ SD G
Sbjct: 310 SASSSDFPCDVSSASTSSATPARSDGG 336
>04_01_0423 - 5597068-5597109,5597181-5597309,5597490-5598431
Length = 370
Score = 27.9 bits (59), Expect = 9.5
Identities = 10/24 (41%), Positives = 17/24 (70%)
Frame = -3
Query: 205 VLDVFSLRDVPAAELLRRWTFSSR 134
VLD+ ++ +PA +L+RWT +R
Sbjct: 196 VLDLMNIESLPAQYILKRWTREAR 219
>03_06_0537 + 34585339-34585581,34585668-34585862,34585964-34586845
Length = 439
Score = 27.9 bits (59), Expect = 9.5
Identities = 15/48 (31%), Positives = 19/48 (39%)
Frame = -3
Query: 250 FCLMVSLLVQALRHSVLDVFSLRDVPAAELLRRWTFSSRGADPAVPTP 107
+ LM+ ALR +V F L R W FS G P +P
Sbjct: 25 YWLMMMAADPALRGAVATAFQQASAHGLNLARTWAFSDGGDQPLQSSP 72
>01_06_1356 +
36627590-36627676,36627869-36628020,36628224-36628471,
36628585-36628707,36628797-36629842
Length = 551
Score = 27.9 bits (59), Expect = 9.5
Identities = 9/24 (37%), Positives = 16/24 (66%)
Frame = +2
Query: 500 MPRNSDQCRGPQYHHVQIEYYGTC 571
MP + ++C+G + V++EY TC
Sbjct: 195 MPGDQNRCKGSAMYEVEVEYGKTC 218
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,126,063
Number of Sequences: 37544
Number of extensions: 465453
Number of successful extensions: 1441
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1387
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1441
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2068401984
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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