Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS31002
         (774 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L21758-1|AAA16827.1|  264|Caenorhabditis elegans osteonectin pro...    78   8e-15
AF036692-3|AAB88325.1|  264|Caenorhabditis elegans Osteonectin (...    78   8e-15
U39999-14|ABF71722.1| 1483|Caenorhabditis elegans Hypothetical p...    40   0.003
AM773423-1|CAO78927.1| 1473|Caenorhabditis elegans AGRin (synapt...    40   0.003
AF098505-1|AAC67415.1|  536|Caenorhabditis elegans Hypothetical ...    30   2.1  
Z69792-5|CAA93668.3| 1410|Caenorhabditis elegans Hypothetical pr...    29   3.7  
AL022270-3|CAB63434.2| 1410|Caenorhabditis elegans Hypothetical ...    29   3.7  
Z81542-12|CAB04422.2|  363|Caenorhabditis elegans Hypothetical p...    29   4.9  
AY157938-1|AAN35200.1| 1751|Caenorhabditis elegans ANC-1 protein.      29   4.9  
AY126454-1|AAM95163.1|  555|Caenorhabditis elegans nesprin-like ...    29   4.9  
AL023821-3|CAA19439.2|  363|Caenorhabditis elegans Hypothetical ...    29   4.9  
AC006834-1|AAF40010.3| 8545|Caenorhabditis elegans Abnormal nucl...    29   4.9  
AC024751-7|AAK21507.2| 1258|Caenorhabditis elegans Hypothetical ...    28   6.4  
Z48716-2|CAA88597.2|  169|Caenorhabditis elegans Hypothetical pr...    28   8.5  

>L21758-1|AAA16827.1|  264|Caenorhabditis elegans osteonectin
           protein.
          Length = 264

 Score = 77.8 bits (183), Expect = 8e-15
 Identities = 36/92 (39%), Positives = 55/92 (59%), Gaps = 3/92 (3%)
 Frame = +2

Query: 497 LMPRNSDQCRGPQYHHVQIEYYGTCREMPDCTESEMSDFPRRMRDWLFNIMRDMAERREL 676
           L  R S +C       V +EY G C+++ +CTE  M+ FP RM DWLF +M+++ +RREL
Sbjct: 111 LCKRKSKECSKAFNAKVHLEYLGECKKLDECTEEHMAQFPERMADWLFQVMKELKKRREL 170

Query: 677 TPHYLKMER---EAESNFTRRWANAAIWKWCD 763
             H L+ E    EAE++  ++     IWK+C+
Sbjct: 171 --HKLEWEELLSEAENDDEKKHVYPVIWKFCE 200



 Score = 54.0 bits (124), Expect = 1e-07
 Identities = 21/49 (42%), Positives = 30/49 (61%), Gaps = 1/49 (2%)
 Frame = +3

Query: 360 CEINEHGDAMCNCIKDCP-YETDSRRMVCTNFNETWQSDCEVYRQRCLC 503
           C + + G+  C CI  CP  + D    VC N N+T+ S C++YR+RCLC
Sbjct: 64  CVVGKKGEPTCECISKCPELDGDPMDKVCANNNQTFTSLCDLYRERCLC 112


>AF036692-3|AAB88325.1|  264|Caenorhabditis elegans Osteonectin
           (sparc) related protein1 protein.
          Length = 264

 Score = 77.8 bits (183), Expect = 8e-15
 Identities = 36/92 (39%), Positives = 55/92 (59%), Gaps = 3/92 (3%)
 Frame = +2

Query: 497 LMPRNSDQCRGPQYHHVQIEYYGTCREMPDCTESEMSDFPRRMRDWLFNIMRDMAERREL 676
           L  R S +C       V +EY G C+++ +CTE  M+ FP RM DWLF +M+++ +RREL
Sbjct: 111 LCKRKSKECSKAFNAKVHLEYLGECKKLDECTEEHMAQFPERMADWLFQVMKELKKRREL 170

Query: 677 TPHYLKMER---EAESNFTRRWANAAIWKWCD 763
             H L+ E    EAE++  ++     IWK+C+
Sbjct: 171 --HKLEWEELLSEAENDDEKKHVYPVIWKFCE 200



 Score = 54.0 bits (124), Expect = 1e-07
 Identities = 21/49 (42%), Positives = 30/49 (61%), Gaps = 1/49 (2%)
 Frame = +3

Query: 360 CEINEHGDAMCNCIKDCP-YETDSRRMVCTNFNETWQSDCEVYRQRCLC 503
           C + + G+  C CI  CP  + D    VC N N+T+ S C++YR+RCLC
Sbjct: 64  CVVGKKGEPTCECISKCPELDGDPMDKVCANNNQTFTSLCDLYRERCLC 112


>U39999-14|ABF71722.1| 1483|Caenorhabditis elegans Hypothetical
           protein F41G3.12 protein.
          Length = 1483

 Score = 39.5 bits (88), Expect = 0.003
 Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
 Frame = +3

Query: 360 CEINEHGDAMCNCIKDCP-YETDSRRMVCTNFNETWQSDCEVYRQRC 497
           C + E+  A C C  DCP YE +  + VC     T+ S+C + +  C
Sbjct: 524 CVVGENEKAECKCPDDCPSYEMEEGKEVCGTDGVTYSSECHMKKSAC 570



 Score = 31.1 bits (67), Expect = 0.91
 Identities = 14/46 (30%), Positives = 21/46 (45%)
 Frame = +3

Query: 360 CEINEHGDAMCNCIKDCPYETDSRRMVCTNFNETWQSDCEVYRQRC 497
           C +     A C C   C    D  R VC    ET+ ++CE+ ++ C
Sbjct: 381 CVVKPDRTAECECPNRCE---DVMRPVCATNGETFDNECEMKKKSC 423


>AM773423-1|CAO78927.1| 1473|Caenorhabditis elegans AGRin (synaptic
           protein) homologfamily member protein.
          Length = 1473

 Score = 39.5 bits (88), Expect = 0.003
 Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
 Frame = +3

Query: 360 CEINEHGDAMCNCIKDCP-YETDSRRMVCTNFNETWQSDCEVYRQRC 497
           C + E+  A C C  DCP YE +  + VC     T+ S+C + +  C
Sbjct: 532 CVVGENEKAECKCPDDCPSYEMEEGKEVCGTDGVTYSSECHMKKSAC 578



 Score = 31.1 bits (67), Expect = 0.91
 Identities = 14/46 (30%), Positives = 21/46 (45%)
 Frame = +3

Query: 360 CEINEHGDAMCNCIKDCPYETDSRRMVCTNFNETWQSDCEVYRQRC 497
           C +     A C C   C    D  R VC    ET+ ++CE+ ++ C
Sbjct: 389 CVVKPDRTAECECPNRCE---DVMRPVCATNGETFDNECEMKKKSC 431


>AF098505-1|AAC67415.1|  536|Caenorhabditis elegans Hypothetical
           protein Y71H10A.2 protein.
          Length = 536

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 13/35 (37%), Positives = 22/35 (62%)
 Frame = -1

Query: 276 VEKVVNSAISASWYRFSSKLSDIPCSMCSASEMSP 172
           V+ V N  I+++ YR S   ++IP   CS+ E++P
Sbjct: 279 VDIVANMIIASASYRTSINTTEIPVIHCSSGELNP 313


>Z69792-5|CAA93668.3| 1410|Caenorhabditis elegans Hypothetical
           protein F40E10.4 protein.
          Length = 1410

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 16/49 (32%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
 Frame = +3

Query: 417 ETDSRRMVCTNF-NETWQSDCEVYRQRCLCLETLISAVVRNTTTFKSSI 560
           E+D +R  C  F  ET   D  +   +C CL+ ++    +N T+F S I
Sbjct: 656 ESDKQR--CAAFPEETCSDDSNLCPPKCSCLDRVVRCSNKNLTSFPSRI 702


>AL022270-3|CAB63434.2| 1410|Caenorhabditis elegans Hypothetical
           protein F40E10.4 protein.
          Length = 1410

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 16/49 (32%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
 Frame = +3

Query: 417 ETDSRRMVCTNF-NETWQSDCEVYRQRCLCLETLISAVVRNTTTFKSSI 560
           E+D +R  C  F  ET   D  +   +C CL+ ++    +N T+F S I
Sbjct: 656 ESDKQR--CAAFPEETCSDDSNLCPPKCSCLDRVVRCSNKNLTSFPSRI 702


>Z81542-12|CAB04422.2|  363|Caenorhabditis elegans Hypothetical
           protein Y102A5B.1 protein.
          Length = 363

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 15/53 (28%), Positives = 25/53 (47%)
 Frame = +1

Query: 343 CSADVSAKSTNTETPCVTASRTVPTRQTPDAWCAQTSTKPGNRIAKYTASDAY 501
           C  ++   ST    P +T+SR+ P   +     + TST P   +  YT +D +
Sbjct: 62  CETELFTSSTLPTIP-ITSSRSRPDSTSTSTTRSVTSTIPTPSVGNYTCTDGF 113


>AY157938-1|AAN35200.1| 1751|Caenorhabditis elegans ANC-1 protein.
          Length = 1751

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 13/40 (32%), Positives = 23/40 (57%)
 Frame = -3

Query: 535  LRTTALIRVSRHKHRWRYTSQSDCQVSLKFVHTMRLESVS 416
            L TT+   V+RH      +++ DC  +++F+  +  ESVS
Sbjct: 946  LATTSETSVNRHLQNLELSNEQDCPDAIEFLEEVGRESVS 985


>AY126454-1|AAM95163.1|  555|Caenorhabditis elegans nesprin-like
           protein protein.
          Length = 555

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 13/40 (32%), Positives = 23/40 (57%)
 Frame = -3

Query: 535 LRTTALIRVSRHKHRWRYTSQSDCQVSLKFVHTMRLESVS 416
           L TT+   V+RH      +++ DC  +++F+  +  ESVS
Sbjct: 258 LATTSETSVNRHLQNLELSNEQDCPDAIEFLEEVGRESVS 297


>AL023821-3|CAA19439.2|  363|Caenorhabditis elegans Hypothetical
           protein Y102A5B.1 protein.
          Length = 363

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 15/53 (28%), Positives = 25/53 (47%)
 Frame = +1

Query: 343 CSADVSAKSTNTETPCVTASRTVPTRQTPDAWCAQTSTKPGNRIAKYTASDAY 501
           C  ++   ST    P +T+SR+ P   +     + TST P   +  YT +D +
Sbjct: 62  CETELFTSSTLPTIP-ITSSRSRPDSTSTSTTRSVTSTIPTPSVGNYTCTDGF 113


>AC006834-1|AAF40010.3| 8545|Caenorhabditis elegans Abnormal nuclear
            anchorage protein1 protein.
          Length = 8545

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 13/40 (32%), Positives = 23/40 (57%)
 Frame = -3

Query: 535  LRTTALIRVSRHKHRWRYTSQSDCQVSLKFVHTMRLESVS 416
            L TT+   V+RH      +++ DC  +++F+  +  ESVS
Sbjct: 946  LATTSETSVNRHLQNLELSNEQDCPDAIEFLEEVGRESVS 985


>AC024751-7|AAK21507.2| 1258|Caenorhabditis elegans Hypothetical
            protein Y18H1A.3 protein.
          Length = 1258

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 15/52 (28%), Positives = 22/52 (42%)
 Frame = +1

Query: 355  VSAKSTNTETPCVTASRTVPTRQTPDAWCAQTSTKPGNRIAKYTASDAYASK 510
            VS K  + ++PC   SRTV  R   D    +   KP   +  +   +A   K
Sbjct: 883  VSRKDFHAKSPCEITSRTVVGRHIWDLDTHEDVRKPATNVTNWLRKEALKGK 934


>Z48716-2|CAA88597.2|  169|Caenorhabditis elegans Hypothetical
           protein F59B10.3 protein.
          Length = 169

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = +2

Query: 632 WLFNIMRDMAERRELTPHY 688
           WLFN  +D  ++REL  HY
Sbjct: 115 WLFNRSKDKQQKRELYEHY 133


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,378,615
Number of Sequences: 27780
Number of extensions: 353282
Number of successful extensions: 1200
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1113
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1196
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1861650246
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)