Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS31000
         (500 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY113512-1|AAM29517.1|  131|Drosophila melanogaster RE59324p pro...   128   6e-30
AE013599-3424|AAF46871.1|  131|Drosophila melanogaster CG3751-PA...   128   6e-30
AY060712-1|AAL28260.1|  280|Drosophila melanogaster GH15448p pro...    30   1.5  
AF435962-1|AAL31972.1|  280|Drosophila melanogaster mitochondria...    30   1.5  
AE013599-3422|AAF46869.1|  280|Drosophila melanogaster CG4207-PA...    30   1.5  
M31162-1|AAA28859.1|  448|Drosophila melanogaster protein ( D.me...    29   3.5  
BT022756-1|AAY55172.1|  287|Drosophila melanogaster IP14752p pro...    28   6.2  
AY089622-1|AAL90360.1|  448|Drosophila melanogaster RE35772p pro...    28   8.2  
AY061501-1|AAL29049.1|  448|Drosophila melanogaster LD46049p pro...    28   8.2  
AE014134-1210|AAF52471.1|  448|Drosophila melanogaster CG8749-PA...    28   8.2  

>AY113512-1|AAM29517.1|  131|Drosophila melanogaster RE59324p
           protein.
          Length = 131

 Score =  128 bits (308), Expect = 6e-30
 Identities = 60/70 (85%), Positives = 64/70 (91%)
 Frame = +3

Query: 45  MSEGTATIRTRKFMTNRLLARKQMVCDVLHPGKPTVSKTEIREKLAKMYKVTPDVVFVFG 224
           MS  TATIRTRKFMTNRLLARKQMVCDVLHPG  +V+KTEIREKLA MYKVTPDVVF FG
Sbjct: 1   MSGTTATIRTRKFMTNRLLARKQMVCDVLHPGLSSVNKTEIREKLAAMYKVTPDVVFAFG 60

Query: 225 FKTNFGGGKS 254
           F+TNFGGG+S
Sbjct: 61  FRTNFGGGRS 70



 Score = 98.7 bits (235), Expect = 4e-21
 Identities = 44/51 (86%), Positives = 49/51 (96%)
 Frame = +2

Query: 254 TGFALIYDTLDLAKKFEPKHRLARHGLYEKKRPTRKQRKERKNRMKKVRGT 406
           TGFALIYDTLD AKKFEPK+RLARHGL+E+K+ TRKQRKER+NRMKKVRGT
Sbjct: 71  TGFALIYDTLDFAKKFEPKYRLARHGLFEQKKQTRKQRKERRNRMKKVRGT 121


>AE013599-3424|AAF46871.1|  131|Drosophila melanogaster CG3751-PA
           protein.
          Length = 131

 Score =  128 bits (308), Expect = 6e-30
 Identities = 60/70 (85%), Positives = 64/70 (91%)
 Frame = +3

Query: 45  MSEGTATIRTRKFMTNRLLARKQMVCDVLHPGKPTVSKTEIREKLAKMYKVTPDVVFVFG 224
           MS  TATIRTRKFMTNRLLARKQMVCDVLHPG  +V+KTEIREKLA MYKVTPDVVF FG
Sbjct: 1   MSGTTATIRTRKFMTNRLLARKQMVCDVLHPGLSSVNKTEIREKLAAMYKVTPDVVFAFG 60

Query: 225 FKTNFGGGKS 254
           F+TNFGGG+S
Sbjct: 61  FRTNFGGGRS 70



 Score = 98.7 bits (235), Expect = 4e-21
 Identities = 44/51 (86%), Positives = 49/51 (96%)
 Frame = +2

Query: 254 TGFALIYDTLDLAKKFEPKHRLARHGLYEKKRPTRKQRKERKNRMKKVRGT 406
           TGFALIYDTLD AKKFEPK+RLARHGL+E+K+ TRKQRKER+NRMKKVRGT
Sbjct: 71  TGFALIYDTLDFAKKFEPKYRLARHGLFEQKKQTRKQRKERRNRMKKVRGT 121


>AY060712-1|AAL28260.1|  280|Drosophila melanogaster GH15448p
           protein.
          Length = 280

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 18/59 (30%), Positives = 24/59 (40%)
 Frame = +2

Query: 137 RKTNRQQDRDP*EARQNVQGYSRCSVRIRFQDKLRRWQVTGFALIYDTLDLAKKFEPKH 313
           R+     D+ P +    V+       R +F   LRRW    F  I + LDL  K  P H
Sbjct: 122 RRYQEHMDKHPRDKMIKVRLKELIDKRKKFLKYLRRWDYPRFEWILEKLDLVYKPPPTH 180


>AF435962-1|AAL31972.1|  280|Drosophila melanogaster mitochondrial
           ribosomal proteinS15 protein.
          Length = 280

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 18/59 (30%), Positives = 24/59 (40%)
 Frame = +2

Query: 137 RKTNRQQDRDP*EARQNVQGYSRCSVRIRFQDKLRRWQVTGFALIYDTLDLAKKFEPKH 313
           R+     D+ P +    V+       R +F   LRRW    F  I + LDL  K  P H
Sbjct: 122 RRYQEHMDKHPRDKMIKVRLKELIDKRKKFLKYLRRWDYPRFEWILEKLDLVYKPPPTH 180


>AE013599-3422|AAF46869.1|  280|Drosophila melanogaster CG4207-PA
           protein.
          Length = 280

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 18/59 (30%), Positives = 24/59 (40%)
 Frame = +2

Query: 137 RKTNRQQDRDP*EARQNVQGYSRCSVRIRFQDKLRRWQVTGFALIYDTLDLAKKFEPKH 313
           R+     D+ P +    V+       R +F   LRRW    F  I + LDL  K  P H
Sbjct: 122 RRYQEHMDKHPRDKMIKVRLKELIDKRKKFLKYLRRWDYPRFEWILEKLDLVYKPPPTH 180


>M31162-1|AAA28859.1|  448|Drosophila melanogaster protein (
           D.melanogaster U1 70Ksmall nuclear ribonucleoprotein
           gene, complete cds. ).
          Length = 448

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 23/88 (26%), Positives = 39/88 (44%)
 Frame = +2

Query: 137 RKTNRQQDRDP*EARQNVQGYSRCSVRIRFQDKLRRWQVTGFALIYDTLDLAKKFEPKHR 316
           R+ +R ++R   E R   +G    S R R + + RR +  G    YD  D   + + +  
Sbjct: 255 RRRSRSRERRDRE-RDRGRGAVASSGRSRSRSRERRKRRAGSRERYDEFDRRDRRDRERE 313

Query: 317 LARHGLYEKKRPTRKQRKERKNRMKKVR 400
             R    EKK+   K R+   +R ++ R
Sbjct: 314 RDRDREREKKKKRSKSRERESSRERRER 341


>BT022756-1|AAY55172.1|  287|Drosophila melanogaster IP14752p
           protein.
          Length = 287

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 15/35 (42%), Positives = 22/35 (62%)
 Frame = +2

Query: 281 LDLAKKFEPKHRLARHGLYEKKRPTRKQRKERKNR 385
           L L KK E   R+ R G   KK PT+K++K++K +
Sbjct: 254 LKLLKKLEKIERMKRKGEGIKK-PTKKKKKKKKKK 287


>AY089622-1|AAL90360.1|  448|Drosophila melanogaster RE35772p
           protein.
          Length = 448

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 22/88 (25%), Positives = 39/88 (44%)
 Frame = +2

Query: 137 RKTNRQQDRDP*EARQNVQGYSRCSVRIRFQDKLRRWQVTGFALIYDTLDLAKKFEPKHR 316
           R+ +R ++R   E R   +G    + R R + + RR +  G    YD  D   + + +  
Sbjct: 255 RRRSRSRERRDRE-RDRGRGAVASNGRSRSRSRERRKRRAGSRERYDEFDRRDRRDRERE 313

Query: 317 LARHGLYEKKRPTRKQRKERKNRMKKVR 400
             R    EKK+   K R+   +R ++ R
Sbjct: 314 RDRDREREKKKKRSKSRERESSRERRER 341


>AY061501-1|AAL29049.1|  448|Drosophila melanogaster LD46049p
           protein.
          Length = 448

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 22/88 (25%), Positives = 39/88 (44%)
 Frame = +2

Query: 137 RKTNRQQDRDP*EARQNVQGYSRCSVRIRFQDKLRRWQVTGFALIYDTLDLAKKFEPKHR 316
           R+ +R ++R   E R   +G    + R R + + RR +  G    YD  D   + + +  
Sbjct: 255 RRRSRSRERRDRE-RDRGRGAVASNGRSRSRSRERRKRRAGSRERYDEFDRRDRRDRERE 313

Query: 317 LARHGLYEKKRPTRKQRKERKNRMKKVR 400
             R    EKK+   K R+   +R ++ R
Sbjct: 314 RDRDREREKKKKRSKSRERESSRERRER 341


>AE014134-1210|AAF52471.1|  448|Drosophila melanogaster CG8749-PA
           protein.
          Length = 448

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 22/88 (25%), Positives = 39/88 (44%)
 Frame = +2

Query: 137 RKTNRQQDRDP*EARQNVQGYSRCSVRIRFQDKLRRWQVTGFALIYDTLDLAKKFEPKHR 316
           R+ +R ++R   E R   +G    + R R + + RR +  G    YD  D   + + +  
Sbjct: 255 RRRSRSRERRDRE-RDRGRGAVASNGRSRSRSRERRKRRAGSRERYDEFDRRDRRDRERE 313

Query: 317 LARHGLYEKKRPTRKQRKERKNRMKKVR 400
             R    EKK+   K R+   +R ++ R
Sbjct: 314 RDRDREREKKKKRSKSRERESSRERRER 341


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,939,693
Number of Sequences: 53049
Number of extensions: 451724
Number of successful extensions: 1505
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1413
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1504
length of database: 24,988,368
effective HSP length: 80
effective length of database: 20,744,448
effective search space used: 1784022528
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)