Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS31000
(500 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF036706-2|ABD94090.1| 131|Caenorhabditis elegans Ribosomal pro... 99 2e-21
Z29115-2|CAA82363.1| 91|Caenorhabditis elegans Hypothetical pr... 42 2e-04
AF036706-3|ABD94091.1| 204|Caenorhabditis elegans Hypothetical ... 40 0.001
Z50027-6|CAO82026.1| 564|Caenorhabditis elegans Hypothetical pr... 28 3.3
AL132876-23|CAD92403.1| 210|Caenorhabditis elegans Hypothetical... 28 3.3
AF039053-9|AAN84838.1| 131|Caenorhabditis elegans Hypothetical ... 28 3.3
AF039053-8|AAC25878.1| 178|Caenorhabditis elegans Hypothetical ... 28 3.3
U55366-7|AAA97985.2| 323|Caenorhabditis elegans Serpentine rece... 28 4.4
Z78418-2|CAB01695.1| 817|Caenorhabditis elegans Hypothetical pr... 27 7.6
Z69904-9|CAH60797.1| 2101|Caenorhabditis elegans Hypothetical pr... 27 7.6
Z69904-8|CAD57719.1| 2392|Caenorhabditis elegans Hypothetical pr... 27 7.6
Z69904-7|CAB54502.2| 2407|Caenorhabditis elegans Hypothetical pr... 27 7.6
Z69904-6|CAB54501.3| 2211|Caenorhabditis elegans Hypothetical pr... 27 7.6
Z66511-12|CAH60796.1| 2101|Caenorhabditis elegans Hypothetical p... 27 7.6
Z66511-11|CAD57694.1| 2392|Caenorhabditis elegans Hypothetical p... 27 7.6
Z66511-10|CAB54211.2| 2407|Caenorhabditis elegans Hypothetical p... 27 7.6
Z66511-9|CAB54210.3| 2211|Caenorhabditis elegans Hypothetical pr... 27 7.6
U55366-8|AAZ91347.1| 287|Caenorhabditis elegans Serpentine rece... 27 7.6
AF040660-1|AAC71148.1| 634|Caenorhabditis elegans Hypothetical ... 27 7.6
>AF036706-2|ABD94090.1| 131|Caenorhabditis elegans Ribosomal
protein, small subunitprotein 24 protein.
Length = 131
Score = 99.1 bits (236), Expect = 2e-21
Identities = 43/64 (67%), Positives = 53/64 (82%)
Frame = +3
Query: 63 TIRTRKFMTNRLLARKQMVCDVLHPGKPTVSKTEIREKLAKMYKVTPDVVFVFGFKTNFG 242
TIRTRK +TN+LL RKQMV +V+HPG+PTV K +IREK+AK+YK TPD V FGF++ G
Sbjct: 6 TIRTRKVLTNKLLYRKQMVVEVIHPGRPTVPKADIREKIAKLYKTTPDTVIPFGFESKIG 65
Query: 243 GGKS 254
GGKS
Sbjct: 66 GGKS 69
Score = 83.4 bits (197), Expect = 8e-17
Identities = 40/62 (64%), Positives = 48/62 (77%), Gaps = 1/62 (1%)
Frame = +2
Query: 224 FQDKLRRWQVTGFALIYDTLDLAKKFEPKHRLARHGLYEK-KRPTRKQRKERKNRMKKVR 400
F+ K+ + GFAL+YDT+D AKKFEPK+RL R GL K ++P RKQRKERKNR KKVR
Sbjct: 60 FESKIGGGKSKGFALVYDTIDFAKKFEPKYRLVRMGLATKVEKPGRKQRKERKNRQKKVR 119
Query: 401 GT 406
GT
Sbjct: 120 GT 121
>Z29115-2|CAA82363.1| 91|Caenorhabditis elegans Hypothetical
protein T26G10.3 protein.
Length = 91
Score = 42.3 bits (95), Expect = 2e-04
Identities = 16/33 (48%), Positives = 23/33 (69%)
Frame = +3
Query: 114 MVCDVLHPGKPTVSKTEIREKLAKMYKVTPDVV 212
MV +V+ PG+PT K +IREK+A Y + PD +
Sbjct: 1 MVAEVILPGRPTTLKADIREKIANFYNINPDTM 33
>AF036706-3|ABD94091.1| 204|Caenorhabditis elegans Hypothetical
protein T07A9.14 protein.
Length = 204
Score = 39.9 bits (89), Expect = 0.001
Identities = 17/43 (39%), Positives = 26/43 (60%)
Frame = +2
Query: 257 GFALIYDTLDLAKKFEPKHRLARHGLYEKKRPTRKQRKERKNR 385
GF L+YDT D A K++P+H + H R + +RKE++ R
Sbjct: 54 GFTLVYDTFDFANKYQPEHS-SNHDGASTSRTSISRRKEKRRR 95
>Z50027-6|CAO82026.1| 564|Caenorhabditis elegans Hypothetical
protein C39B10.2b protein.
Length = 564
Score = 28.3 bits (60), Expect = 3.3
Identities = 14/48 (29%), Positives = 24/48 (50%)
Frame = -2
Query: 310 LGLELLGQIECVVDQSESSDLPPPKFVLKPNTNTTSGVTLYILASFSR 167
+ + + + C D+++SS KF KP N T+G YI S ++
Sbjct: 459 MAMSIYDNVSCRKDEADSSS-EETKFSTKPKRNGTNGTRKYIDKSLNQ 505
>AL132876-23|CAD92403.1| 210|Caenorhabditis elegans Hypothetical
protein Y105E8A.28 protein.
Length = 210
Score = 28.3 bits (60), Expect = 3.3
Identities = 15/41 (36%), Positives = 19/41 (46%)
Frame = +1
Query: 277 HTRSGQEVRAQAQVSPPRPVREEEAHAQTA*RT*EQNEEGP 399
H R+ + R + V PP+ E E A A EQN GP
Sbjct: 26 HLRNEELHRFRQAVPPPQQAEEAEEEADVAENVVEQNRLGP 66
>AF039053-9|AAN84838.1| 131|Caenorhabditis elegans Hypothetical
protein C45H4.14b protein.
Length = 131
Score = 28.3 bits (60), Expect = 3.3
Identities = 16/42 (38%), Positives = 23/42 (54%)
Frame = +2
Query: 269 IYDTLDLAKKFEPKHRLARHGLYEKKRPTRKQRKERKNRMKK 394
I LD KK E KHR A+ +K+ ++Q K+ K +KK
Sbjct: 17 ILKKLDEKKKTEEKHR-AKQERQAQKKGAKEQAKKEKAELKK 57
>AF039053-8|AAC25878.1| 178|Caenorhabditis elegans Hypothetical
protein C45H4.14a protein.
Length = 178
Score = 28.3 bits (60), Expect = 3.3
Identities = 16/42 (38%), Positives = 23/42 (54%)
Frame = +2
Query: 269 IYDTLDLAKKFEPKHRLARHGLYEKKRPTRKQRKERKNRMKK 394
I LD KK E KHR A+ +K+ ++Q K+ K +KK
Sbjct: 64 ILKKLDEKKKTEEKHR-AKQERQAQKKGAKEQAKKEKAELKK 104
>U55366-7|AAA97985.2| 323|Caenorhabditis elegans Serpentine
receptor, class x protein74 protein.
Length = 323
Score = 27.9 bits (59), Expect = 4.4
Identities = 20/50 (40%), Positives = 29/50 (58%), Gaps = 3/50 (6%)
Frame = -2
Query: 175 FSRISVLLTV-GFPGCKTSQTICL-RA-NNLLVMNLRVRIVAVPSLILNY 35
FS + V L V GF + ICL RA NN++V+ + I P+L+L+Y
Sbjct: 22 FSSLIVYLYVSGFAEKTSFNVICLVRAVNNIIVLVVNFLIFLFPTLLLSY 71
>Z78418-2|CAB01695.1| 817|Caenorhabditis elegans Hypothetical
protein F25D7.3 protein.
Length = 817
Score = 27.1 bits (57), Expect = 7.6
Identities = 21/79 (26%), Positives = 34/79 (43%), Gaps = 2/79 (2%)
Frame = -1
Query: 239 EVCLE--TEYEHYIGSNLVHFGELLTDLGLADGWFSWM*NIANHLLARQQSVGHELASAN 66
E+C + T+ H +LVH GE + D FS N+ HL + +
Sbjct: 539 EICTKEFTQLAHLQKHHLVHTGERPHRCDICDKRFSSTSNLKTHLRLHNGQKPYTCDVCD 598
Query: 65 SRCSFTHFELFSIIRRLHA 9
++ FT + + +RLHA
Sbjct: 599 AK--FTQYVHLRLHKRLHA 615
>Z69904-9|CAH60797.1| 2101|Caenorhabditis elegans Hypothetical
protein F07A11.6e protein.
Length = 2101
Score = 27.1 bits (57), Expect = 7.6
Identities = 11/21 (52%), Positives = 15/21 (71%)
Frame = +2
Query: 338 EKKRPTRKQRKERKNRMKKVR 400
E+KR +K+R ERK +KVR
Sbjct: 820 ERKREKKKERDERKKEKEKVR 840
>Z69904-8|CAD57719.1| 2392|Caenorhabditis elegans Hypothetical protein
F07A11.6c protein.
Length = 2392
Score = 27.1 bits (57), Expect = 7.6
Identities = 11/21 (52%), Positives = 15/21 (71%)
Frame = +2
Query: 338 EKKRPTRKQRKERKNRMKKVR 400
E+KR +K+R ERK +KVR
Sbjct: 1111 ERKREKKKERDERKKEKEKVR 1131
>Z69904-7|CAB54502.2| 2407|Caenorhabditis elegans Hypothetical protein
F07A11.6b protein.
Length = 2407
Score = 27.1 bits (57), Expect = 7.6
Identities = 11/21 (52%), Positives = 15/21 (71%)
Frame = +2
Query: 338 EKKRPTRKQRKERKNRMKKVR 400
E+KR +K+R ERK +KVR
Sbjct: 1126 ERKREKKKERDERKKEKEKVR 1146
>Z69904-6|CAB54501.3| 2211|Caenorhabditis elegans Hypothetical protein
F07A11.6a protein.
Length = 2211
Score = 27.1 bits (57), Expect = 7.6
Identities = 11/21 (52%), Positives = 15/21 (71%)
Frame = +2
Query: 338 EKKRPTRKQRKERKNRMKKVR 400
E+KR +K+R ERK +KVR
Sbjct: 1126 ERKREKKKERDERKKEKEKVR 1146
>Z66511-12|CAH60796.1| 2101|Caenorhabditis elegans Hypothetical
protein F07A11.6e protein.
Length = 2101
Score = 27.1 bits (57), Expect = 7.6
Identities = 11/21 (52%), Positives = 15/21 (71%)
Frame = +2
Query: 338 EKKRPTRKQRKERKNRMKKVR 400
E+KR +K+R ERK +KVR
Sbjct: 820 ERKREKKKERDERKKEKEKVR 840
>Z66511-11|CAD57694.1| 2392|Caenorhabditis elegans Hypothetical
protein F07A11.6c protein.
Length = 2392
Score = 27.1 bits (57), Expect = 7.6
Identities = 11/21 (52%), Positives = 15/21 (71%)
Frame = +2
Query: 338 EKKRPTRKQRKERKNRMKKVR 400
E+KR +K+R ERK +KVR
Sbjct: 1111 ERKREKKKERDERKKEKEKVR 1131
>Z66511-10|CAB54211.2| 2407|Caenorhabditis elegans Hypothetical
protein F07A11.6b protein.
Length = 2407
Score = 27.1 bits (57), Expect = 7.6
Identities = 11/21 (52%), Positives = 15/21 (71%)
Frame = +2
Query: 338 EKKRPTRKQRKERKNRMKKVR 400
E+KR +K+R ERK +KVR
Sbjct: 1126 ERKREKKKERDERKKEKEKVR 1146
>Z66511-9|CAB54210.3| 2211|Caenorhabditis elegans Hypothetical protein
F07A11.6a protein.
Length = 2211
Score = 27.1 bits (57), Expect = 7.6
Identities = 11/21 (52%), Positives = 15/21 (71%)
Frame = +2
Query: 338 EKKRPTRKQRKERKNRMKKVR 400
E+KR +K+R ERK +KVR
Sbjct: 1126 ERKREKKKERDERKKEKEKVR 1146
>U55366-8|AAZ91347.1| 287|Caenorhabditis elegans Serpentine
receptor, class x protein73 protein.
Length = 287
Score = 27.1 bits (57), Expect = 7.6
Identities = 16/35 (45%), Positives = 23/35 (65%), Gaps = 3/35 (8%)
Frame = -2
Query: 130 KTS-QTICL-RA-NNLLVMNLRVRIVAVPSLILNY 35
KTS ICL RA NN++V+ ++ PSL+L+Y
Sbjct: 4 KTSFNVICLTRAVNNIIVLVFNFLVITFPSLLLSY 38
>AF040660-1|AAC71148.1| 634|Caenorhabditis elegans Hypothetical
protein W05G11.4 protein.
Length = 634
Score = 27.1 bits (57), Expect = 7.6
Identities = 10/34 (29%), Positives = 20/34 (58%)
Frame = +2
Query: 245 WQVTGFALIYDTLDLAKKFEPKHRLARHGLYEKK 346
W ++ ALI + ++ PK + ++HG+Y+ K
Sbjct: 154 WLLSAMALIAEKPEVLDAIIPKKQYSKHGVYQVK 187
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,143,421
Number of Sequences: 27780
Number of extensions: 228962
Number of successful extensions: 819
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 766
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 815
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 956602620
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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