Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS30998
(635 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC17G9.09 |tif213||translation initiation factor eIF2 gamma su... 133 2e-32
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 32 0.080
SPBC2G2.02 |syj1||inositol-polyphosphate 5-phosphatase |Schizosa... 29 0.56
SPAC13C5.02 |dre4||DNA replication protein Dre4|Schizosaccharomy... 28 1.3
SPAC11E3.05 |||ubiquitin-protein ligase E3|Schizosaccharomyces p... 27 3.0
SPCC23B6.04c |||sec14 cytosolic factor family|Schizosaccharomyce... 27 3.0
SPAPB21F2.02 |||Dopey family protein|Schizosaccharomyces pombe|c... 26 4.0
SPAC6F12.09 |rdp1|rdr1|RNA-directed RNA polymerase Rdp1|Schizosa... 26 5.2
>SPBC17G9.09 |tif213||translation initiation factor eIF2 gamma
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 446
Score = 133 bits (322), Expect = 2e-32
Identities = 61/85 (71%), Positives = 74/85 (87%)
Frame = +2
Query: 2 SILQGVLTVGMEIEVRPGLVSKDADGKLTCRPIFSRIVSLFAEQNELQYAVPGGLIGVGT 181
SIL GVL + EIE+RPG+V+KD DG++ C+PIFSRI+SLFAE N+L+ AVPGGLIGVGT
Sbjct: 262 SILTGVLRLNDEIEIRPGIVTKDDDGRIRCQPIFSRIISLFAEHNDLKIAVPGGLIGVGT 321
Query: 182 KIEPTLCRADRLVGQVLGAVGCLPE 256
++PTLCRADRLVGQVLG+ G LPE
Sbjct: 322 TVDPTLCRADRLVGQVLGSKGNLPE 346
Score = 122 bits (294), Expect = 4e-29
Identities = 57/84 (67%), Positives = 70/84 (83%)
Frame = +1
Query: 256 IFVKLEVSYYLLKRLLGVRTEGDKKAAKVQKLVKNEVLLVNIGSLSTGGRVIATKVDLAK 435
++ +LE++Y+LL+RLLGV++ GDK KVQKL KNEVL+VNIGS STGGRV+ K D+AK
Sbjct: 347 VYTELEINYFLLRRLLGVKS-GDKNTTKVQKLAKNEVLMVNIGSTSTGGRVMMVKADMAK 405
Query: 436 IALTNPVCTEIGEKVALSRRVENH 507
I LT P CTEIGEKVALSRR+E H
Sbjct: 406 ILLTAPACTEIGEKVALSRRIEKH 429
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 31.9 bits (69), Expect = 0.080
Identities = 27/82 (32%), Positives = 34/82 (41%), Gaps = 2/82 (2%)
Frame = -3
Query: 264 DKNSGKHPTAPNTCPTSLSARHSVGSIFVPTPIRP--PGTAYCSSFCSANSETMRENMGR 91
D NS PT +C TS S + GS + TPI P P T+ S+ +
Sbjct: 159 DTNSNPLPTTSTSCTTSTSIPPTGGSSSLSTPITPTVPPTSTSSTSIPIPPTSTSSTDTN 218
Query: 90 QVNLPSASLLTKPGRTSISIPT 25
LP+ S TS SIPT
Sbjct: 219 SSPLPTTSTSC---TTSTSIPT 237
Score = 27.1 bits (57), Expect = 2.3
Identities = 25/79 (31%), Positives = 30/79 (37%)
Frame = -3
Query: 264 DKNSGKHPTAPNTCPTSLSARHSVGSIFVPTPIRPPGTAYCSSFCSANSETMRENMGRQV 85
D NS PT +C TS S + S TP PP + +S + T
Sbjct: 272 DTNSSPLPTTSTSCTTSTSIPPTGNSTTPVTPTVPPTSTSSTSTPPPPASTSSTGTSSS- 330
Query: 84 NLPSASLLTKPGRTSISIP 28
LPS S TS SIP
Sbjct: 331 PLPSTSTSC---TTSTSIP 346
>SPBC2G2.02 |syj1||inositol-polyphosphate 5-phosphatase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1076
Score = 29.1 bits (62), Expect = 0.56
Identities = 14/45 (31%), Positives = 22/45 (48%)
Frame = -3
Query: 579 KHKISCWLVL*LYLLEFVPNQLTAVIFYSSTQCYFFSNFRANRVR 445
KH++ W LY E VP+ +V Y S ++ + AN V+
Sbjct: 808 KHRVPAWTDRILYRGELVPHSYQSVPLYYSDHRPIYATYEANIVK 852
>SPAC13C5.02 |dre4||DNA replication protein Dre4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 411
Score = 27.9 bits (59), Expect = 1.3
Identities = 18/48 (37%), Positives = 27/48 (56%)
Frame = -1
Query: 395 VLNDPIFTRRTSFLTNFWTLAAFLSPSVRTPSKRFKR**DTSSLTKIP 252
V++ TRR + L++FWTL L ++ P +FKR SS +IP
Sbjct: 294 VVSTKKITRRKNTLSDFWTLLHSLPSTLLWP--QFKRKYRKSSTLQIP 339
>SPAC11E3.05 |||ubiquitin-protein ligase E3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1323
Score = 26.6 bits (56), Expect = 3.0
Identities = 12/49 (24%), Positives = 21/49 (42%)
Frame = -3
Query: 180 VPTPIRPPGTAYCSSFCSANSETMRENMGRQVNLPSASLLTKPGRTSIS 34
+P P + G + + E +G Q+NLP +L K S++
Sbjct: 1090 IPNPKKQSGNTSADQVLFNQPKQVTEKLGVQLNLPKTKILEKVSSHSLA 1138
>SPCC23B6.04c |||sec14 cytosolic factor family|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1008
Score = 26.6 bits (56), Expect = 3.0
Identities = 14/49 (28%), Positives = 21/49 (42%)
Frame = -3
Query: 246 HPTAPNTCPTSLSARHSVGSIFVPTPIRPPGTAYCSSFCSANSETMREN 100
+P NT + L RH V S+ + PPG + + S + R N
Sbjct: 701 YPARQNTKTSPLQIRHLVFSLECAIDLMPPGVETLALLINFKSSSNRSN 749
>SPAPB21F2.02 |||Dopey family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1687
Score = 26.2 bits (55), Expect = 4.0
Identities = 13/28 (46%), Positives = 17/28 (60%)
Frame = -3
Query: 546 LYLLEFVPNQLTAVIFYSSTQCYFFSNF 463
L +LEF+ ++L I SS Q Y SNF
Sbjct: 902 LQMLEFLLSRLDGTIDLSSEQHYLLSNF 929
>SPAC6F12.09 |rdp1|rdr1|RNA-directed RNA polymerase
Rdp1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1215
Score = 25.8 bits (54), Expect = 5.2
Identities = 18/53 (33%), Positives = 29/53 (54%), Gaps = 10/53 (18%)
Frame = -3
Query: 528 VPNQLTAVIFYSSTQ-----CYFF---SNFRANRVRK--GDFSQINFCGDYSA 400
V NQ+ + + ++Q YFF S+ A ++R+ GDFS+IN Y+A
Sbjct: 528 VGNQIYEFLAFGNSQLREHGAYFFASGSDLNAKQIREWMGDFSEINSVSKYAA 580
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,636,055
Number of Sequences: 5004
Number of extensions: 56073
Number of successful extensions: 133
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 124
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 131
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 283719918
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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