Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS30998
(635 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_02_1049 + 25681284-25681349,25684409-25684627,25684720-256849... 131 4e-31
12_01_0491 - 3884764-3885114,3885143-3885403,3885493-3885711,388... 131 4e-31
03_02_0899 + 12257831-12257858,12258490-12258561,12259121-122604... 31 1.0
03_06_0090 + 31570588-31570710,31570962-31571080,31572215-315722... 30 1.3
04_04_1155 - 31308704-31309051,31309301-31309451,31309532-313097... 30 1.8
12_01_0526 - 4171313-4171417,4171514-4171597,4171688-4171758,417... 29 4.1
08_01_0732 - 6672839-6672937,6672990-6673571,6673755-6674417 28 7.1
02_02_0453 + 10420585-10421661,10422015-10422146,10422232-104224... 27 9.4
01_06_0355 + 28657833-28660665,28660762-28661126 27 9.4
>12_02_1049 +
25681284-25681349,25684409-25684627,25684720-25684980,
25685060-25685362
Length = 282
Score = 131 bits (317), Expect = 4e-31
Identities = 62/85 (72%), Positives = 71/85 (83%)
Frame = +2
Query: 2 SILQGVLTVGMEIEVRPGLVSKDADGKLTCRPIFSRIVSLFAEQNELQYAVPGGLIGVGT 181
SIL+GVL V IEVRPG+V KD G + C PI+SRIVSL+AEQNELQ+AVPGGLIGVGT
Sbjct: 92 SILRGVLRVNQNIEVRPGIVMKDESGNIKCTPIYSRIVSLYAEQNELQFAVPGGLIGVGT 151
Query: 182 KIEPTLCRADRLVGQVLGAVGCLPE 256
++PTL RADRLVGQVLG VG LP+
Sbjct: 152 TMDPTLTRADRLVGQVLGEVGSLPD 176
Score = 120 bits (290), Expect = 7e-28
Identities = 55/84 (65%), Positives = 71/84 (84%)
Frame = +1
Query: 256 IFVKLEVSYYLLKRLLGVRTEGDKKAAKVQKLVKNEVLLVNIGSLSTGGRVIATKVDLAK 435
++V+LE++++LL+RLLGVRT+G +KA KV KL K E+L++NIGS+STG RV+A K DLAK
Sbjct: 177 VYVELEINFFLLRRLLGVRTKGTEKAGKVSKLTKGEILMLNIGSMSTGARVVAVKNDLAK 236
Query: 436 IALTNPVCTEIGEKVALSRRVENH 507
+ LT PVCT GEKVALSRRVE H
Sbjct: 237 LQLTAPVCTSKGEKVALSRRVEKH 260
>12_01_0491 -
3884764-3885114,3885143-3885403,3885493-3885711,
3885792-3886019,3886378-3886480,3886703-3886815,
3887262-3887323,3887915-3888104
Length = 508
Score = 131 bits (317), Expect = 4e-31
Identities = 62/85 (72%), Positives = 71/85 (83%)
Frame = +2
Query: 2 SILQGVLTVGMEIEVRPGLVSKDADGKLTCRPIFSRIVSLFAEQNELQYAVPGGLIGVGT 181
SIL+GVL V IEVRPG+V KD G + C PI+SRIVSL+AEQNELQ+AVPGGLIGVGT
Sbjct: 302 SILRGVLRVNQNIEVRPGIVMKDESGNIKCTPIYSRIVSLYAEQNELQFAVPGGLIGVGT 361
Query: 182 KIEPTLCRADRLVGQVLGAVGCLPE 256
++PTL RADRLVGQVLG VG LP+
Sbjct: 362 TMDPTLTRADRLVGQVLGEVGSLPD 386
Score = 113 bits (272), Expect = 1e-25
Identities = 52/79 (65%), Positives = 66/79 (83%)
Frame = +1
Query: 271 EVSYYLLKRLLGVRTEGDKKAAKVQKLVKNEVLLVNIGSLSTGGRVIATKVDLAKIALTN 450
+++++LL+RLLGVRT+G +KA KV KL K E+L++NIGS+STG RV+A K DLAK+ LT
Sbjct: 408 QINFFLLRRLLGVRTKGTEKAGKVSKLTKGEILMLNIGSMSTGARVVAVKNDLAKLQLTA 467
Query: 451 PVCTEIGEKVALSRRVENH 507
PVCT GEKVALSRRVE H
Sbjct: 468 PVCTSKGEKVALSRRVEKH 486
>03_02_0899 +
12257831-12257858,12258490-12258561,12259121-12260413,
12260593-12261224
Length = 674
Score = 30.7 bits (66), Expect = 1.0
Identities = 18/61 (29%), Positives = 29/61 (47%)
Frame = +2
Query: 83 LTCRPIFSRIVSLFAEQNELQYAVPGGLIGVGTKIEPTLCRADRLVGQVLGAVGCLPEFL 262
+TC P SRI +L L A+P +G ++ R++RL+G + + LP
Sbjct: 100 VTCSPDRSRISALRVPAAGLIGAIPPNTLGRLVSLQVLSLRSNRLIGSIPSDITSLPSLQ 159
Query: 263 S 265
S
Sbjct: 160 S 160
>03_06_0090 +
31570588-31570710,31570962-31571080,31572215-31572284,
31572544-31573492,31574789-31575699
Length = 723
Score = 30.3 bits (65), Expect = 1.3
Identities = 17/61 (27%), Positives = 26/61 (42%)
Frame = +2
Query: 101 FSRIVSLFAEQNELQYAVPGGLIGVGTKIEPTLCRADRLVGQVLGAVGCLPEFLSNSKYL 280
F+R+++ E+N + G LI + P L R+ R VG A P K L
Sbjct: 314 FTRVIAAMKERNVGPEIIEGALIAYAKRSIPGLSRSGRHVGGATAAAAAAPSSDGEQKAL 373
Query: 281 I 283
+
Sbjct: 374 L 374
>04_04_1155 -
31308704-31309051,31309301-31309451,31309532-31309763,
31309854-31310064,31310304-31310422,31310507-31310581,
31310789-31310990,31311075-31311454,31311569-31311633,
31311735-31311779,31312166-31312231,31312667-31312741,
31313022-31313093,31313659-31313727,31313813-31313884,
31313995-31314066,31314441-31314512,31314597-31314668,
31315091-31315162,31315279-31315474,31316094-31316202
Length = 924
Score = 29.9 bits (64), Expect = 1.8
Identities = 16/55 (29%), Positives = 29/55 (52%)
Frame = +1
Query: 349 LVKNEVLLVNIGSLSTGGRVIATKVDLAKIALTNPVCTEIGEKVALSRRVENHCG 513
L+ VLL+ + + + + +ATK D + A N V ++G++ +LS N G
Sbjct: 8 LLHGGVLLLLLAAAAVQAQRVATKTDPTEAAALNAVFAKLGQQASLSTATWNISG 62
>12_01_0526 -
4171313-4171417,4171514-4171597,4171688-4171758,
4171814-4171891,4174482-4174569,4174659-4174850,
4174939-4175802
Length = 493
Score = 28.7 bits (61), Expect = 4.1
Identities = 14/39 (35%), Positives = 25/39 (64%)
Frame = -1
Query: 503 FSTLLLNATFSPISVQTGFVRAILAKSTFVAITRPPVLN 387
F+T L+A + I + + A+LAK+T +A+ + PV+N
Sbjct: 277 FTTDALDALYKKIKPKGVTMSALLAKATAMALVQHPVIN 315
>08_01_0732 - 6672839-6672937,6672990-6673571,6673755-6674417
Length = 447
Score = 27.9 bits (59), Expect = 7.1
Identities = 13/27 (48%), Positives = 16/27 (59%)
Frame = -1
Query: 461 VQTGFVRAILAKSTFVAITRPPVLNDP 381
V GFV A+ AKST + R +NDP
Sbjct: 47 VSRGFVAALEAKSTLIDQVREAQINDP 73
>02_02_0453 +
10420585-10421661,10422015-10422146,10422232-10422456,
10422555-10422680,10422777-10422839,10423214-10423296,
10424078-10424309,10424421-10424489,10424532-10424731,
10424819-10424894,10425015-10425081,10425194-10425471,
10425600-10425787,10426235-10426391,10426496-10426741
Length = 1072
Score = 27.5 bits (58), Expect = 9.4
Identities = 14/34 (41%), Positives = 18/34 (52%), Gaps = 3/34 (8%)
Frame = +2
Query: 245 CLPEFL---SNSKYLIIF*NVCLACALKEIKRLP 337
C+PE L ++ YL I N CL C+L I P
Sbjct: 821 CVPEVLCTCADQSYLGILLNCCLCCSLASILHAP 854
>01_06_0355 + 28657833-28660665,28660762-28661126
Length = 1065
Score = 27.5 bits (58), Expect = 9.4
Identities = 14/48 (29%), Positives = 25/48 (52%)
Frame = +2
Query: 110 IVSLFAEQNELQYAVPGGLIGVGTKIEPTLCRADRLVGQVLGAVGCLP 253
I+ L +NEL +P G+ +++ ++L G + GA+G LP
Sbjct: 175 IMYLGLSRNELSGQIPRGMFNGTSQLVFLSLAYNKLTGSIPGAIGFLP 222
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,623,447
Number of Sequences: 37544
Number of extensions: 348197
Number of successful extensions: 910
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 882
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 910
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1561213104
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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