Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30998
         (635 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC025716-9|AAK39619.1|  469|Caenorhabditis elegans Hypothetical ...   138   2e-33
U11279-1|AAW88399.1| 2886|Caenorhabditis elegans Sensory axon gu...    28   4.9  
AY763581-1|AAV41897.1| 2914|Caenorhabditis elegans SAX-2 protein.      28   4.9  

>AC025716-9|AAK39619.1|  469|Caenorhabditis elegans Hypothetical
           protein Y39G10AR.8 protein.
          Length = 469

 Score =  138 bits (335), Expect = 2e-33
 Identities = 63/85 (74%), Positives = 75/85 (88%)
 Frame = +2

Query: 2   SILQGVLTVGMEIEVRPGLVSKDADGKLTCRPIFSRIVSLFAEQNELQYAVPGGLIGVGT 181
           ++ +G+L VG EIEVRPG+VSK A G+L CRPIFSRI SLFAE+N+L+YAVPGGLIGVGT
Sbjct: 281 TLTKGILRVGQEIEVRPGIVSKTATGQLQCRPIFSRIDSLFAEKNQLEYAVPGGLIGVGT 340

Query: 182 KIEPTLCRADRLVGQVLGAVGCLPE 256
           KI+PTLCR DRLVG +LGAVG LP+
Sbjct: 341 KIDPTLCRGDRLVGHILGAVGTLPD 365



 Score =  128 bits (310), Expect = 2e-30
 Identities = 60/82 (73%), Positives = 71/82 (86%)
 Frame = +1

Query: 256 IFVKLEVSYYLLKRLLGVRTEGDKKAAKVQKLVKNEVLLVNIGSLSTGGRVIATKVDLAK 435
           IF+++E+S+YLL+RLLGVRTEG KK AKVQKLVK E LLVNIGSLSTGGRV A K D AK
Sbjct: 366 IFIEIEISFYLLRRLLGVRTEGKKKGAKVQKLVKEETLLVNIGSLSTGGRVTAVKGDAAK 425

Query: 436 IALTNPVCTEIGEKVALSRRVE 501
           I L +P+CTE+GEK+A+SRR E
Sbjct: 426 IRLNDPICTEVGEKIAMSRRFE 447


>U11279-1|AAW88399.1| 2886|Caenorhabditis elegans Sensory axon
           guidance protein 2,isoform a protein.
          Length = 2886

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 20/77 (25%), Positives = 32/77 (41%)
 Frame = -3

Query: 243 PTAPNTCPTSLSARHSVGSIFVPTPIRPPGTAYCSSFCSANSETMRENMGRQVNLPSASL 64
           PT+P +C +S    +S  S  +      P T   +S   +NS +  +      +LP +S 
Sbjct: 698 PTSPPSCHSSHVTSNSTHSTHISVSF--PNTVTSASSILSNSSSPHQPTPSLCSLPESSS 755

Query: 63  LTKPGRTSISIPTVRTP 13
           L        S+ T  TP
Sbjct: 756 LHSIPTAMTSLSTTTTP 772


>AY763581-1|AAV41897.1| 2914|Caenorhabditis elegans SAX-2 protein.
          Length = 2914

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 20/77 (25%), Positives = 32/77 (41%)
 Frame = -3

Query: 243 PTAPNTCPTSLSARHSVGSIFVPTPIRPPGTAYCSSFCSANSETMRENMGRQVNLPSASL 64
           PT+P +C +S    +S  S  +      P T   +S   +NS +  +      +LP +S 
Sbjct: 698 PTSPPSCHSSHVTSNSTHSTHISVSF--PNTVTSASSILSNSSSPHQPTPSLCSLPESSS 755

Query: 63  LTKPGRTSISIPTVRTP 13
           L        S+ T  TP
Sbjct: 756 LHSIPTAMTSLSTTTTP 772


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,531,193
Number of Sequences: 27780
Number of extensions: 313183
Number of successful extensions: 825
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 782
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 824
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1406256614
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)