Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30998
         (635 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X16709-1|CAA34681.1|  162|Apis mellifera phospholipase A-2 protein.    24   1.4  
EF373554-1|ABQ28728.1|  167|Apis mellifera phospholipase A2 prot...    24   1.4  
AF438408-1|AAL30844.1|  167|Apis mellifera phospholipase A2 prot...    24   1.4  
DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated...    22   5.7  
AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic ac...    21   7.6  

>X16709-1|CAA34681.1|  162|Apis mellifera phospholipase A-2 protein.
          Length = 162

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 10/22 (45%), Positives = 11/22 (50%)
 Frame = -2

Query: 238 CS*YLSHKSISTAQRWFDLRSY 173
           C  Y   KS     +WFDLR Y
Sbjct: 141 CLHYTVDKSKPKVYQWFDLRKY 162


>EF373554-1|ABQ28728.1|  167|Apis mellifera phospholipase A2
           protein.
          Length = 167

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 10/22 (45%), Positives = 11/22 (50%)
 Frame = -2

Query: 238 CS*YLSHKSISTAQRWFDLRSY 173
           C  Y   KS     +WFDLR Y
Sbjct: 146 CLHYTVDKSKPKVYQWFDLRKY 167


>AF438408-1|AAL30844.1|  167|Apis mellifera phospholipase A2
           protein.
          Length = 167

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 10/22 (45%), Positives = 11/22 (50%)
 Frame = -2

Query: 238 CS*YLSHKSISTAQRWFDLRSY 173
           C  Y   KS     +WFDLR Y
Sbjct: 146 CLHYTVDKSKPKVYQWFDLRKY 167


>DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 391

 Score = 21.8 bits (44), Expect = 5.7
 Identities = 10/42 (23%), Positives = 19/42 (45%), Gaps = 3/42 (7%)
 Frame = -3

Query: 324 ISFSAHAKQTFQKIIRYFEFDKNSGKH---PTAPNTCPTSLS 208
           + +       F +++ +F F++  G H     AP+T    LS
Sbjct: 176 VDYMLEKSGNFSRLVVFFRFERQIGHHLIQTFAPSTLVVMLS 217


>AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic
           acetylcholine Apisa7-2 subunit protein.
          Length = 461

 Score = 21.4 bits (43), Expect = 7.6
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = +1

Query: 556 QPTTNFMFFLHLIM*TMFYVFNKIL 630
           +P  +  + + L    MFYVFN IL
Sbjct: 198 EPYPDITYEIRLRRRPMFYVFNLIL 222


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 173,390
Number of Sequences: 438
Number of extensions: 3544
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19071468
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)