Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30997
         (351 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z67737-2|CAA91537.3|  400|Caenorhabditis elegans Hypothetical pr...    27   5.0  
Z69718-3|CAA93538.1|  365|Caenorhabditis elegans Hypothetical pr...    26   6.6  
Z32683-8|CAA83622.1|  160|Caenorhabditis elegans Hypothetical pr...    26   6.6  
U97550-4|AAK18978.2|  773|Caenorhabditis elegans Hypothetical pr...    26   6.6  

>Z67737-2|CAA91537.3|  400|Caenorhabditis elegans Hypothetical
           protein T01H10.2 protein.
          Length = 400

 Score = 26.6 bits (56), Expect = 5.0
 Identities = 8/24 (33%), Positives = 17/24 (70%)
 Frame = -3

Query: 340 FFIIVKQNMSYFVFLVFFPDRVIH 269
           F I +K+N  Y+++++ FP  +I+
Sbjct: 250 FEITIKRNPLYYIYMIIFPSFIIN 273


>Z69718-3|CAA93538.1|  365|Caenorhabditis elegans Hypothetical
           protein W06D11.4 protein.
          Length = 365

 Score = 26.2 bits (55), Expect = 6.6
 Identities = 11/30 (36%), Positives = 16/30 (53%), Gaps = 1/30 (3%)
 Frame = +2

Query: 113 LASRNITWFFLKLPTYFTNRNR-KNKYYQC 199
           L   N++W   K+P Y T  NR K  ++ C
Sbjct: 333 LVDNNVSWTSRKVPFYLTTINRNKVSFFYC 362


>Z32683-8|CAA83622.1|  160|Caenorhabditis elegans Hypothetical
           protein R07E5.13 protein.
          Length = 160

 Score = 26.2 bits (55), Expect = 6.6
 Identities = 9/19 (47%), Positives = 16/19 (84%)
 Frame = -1

Query: 186 LFLRFRFVKYVGNFKKNQV 130
           LFL + F +++GNF+KN++
Sbjct: 135 LFLWYPFFEFLGNFRKNKL 153


>U97550-4|AAK18978.2|  773|Caenorhabditis elegans Hypothetical
           protein T20F7.1 protein.
          Length = 773

 Score = 26.2 bits (55), Expect = 6.6
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = +2

Query: 164 TNRNRKNKYYQCQH 205
           TN+  K+ YYQCQH
Sbjct: 375 TNKFSKSTYYQCQH 388


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,220,846
Number of Sequences: 27780
Number of extensions: 130302
Number of successful extensions: 273
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 272
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 273
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 472561672
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)