Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30996
         (693 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81525-8|CAB04257.1|  208|Caenorhabditis elegans Hypothetical pr...    32   0.45 
AF067947-6|AAO25992.1|  255|Caenorhabditis elegans Hypothetical ...    30   1.8  
U88173-8|AAK21380.1|  267|Caenorhabditis elegans C.elegans y-box...    29   3.2  
U29535-3|AAK31458.1|  556|Caenorhabditis elegans Hypothetical pr...    29   4.2  
U23486-8|AAC46779.3| 1025|Caenorhabditis elegans Nmda class glut...    29   4.2  
AL033510-5|CAA22068.1|  239|Caenorhabditis elegans Hypothetical ...    29   4.2  
AF318613-1|AAK01101.2| 1025|Caenorhabditis elegans NMDA-type ion...    29   4.2  
AF047659-15|AAC04426.1|  493|Caenorhabditis elegans Hypothetical...    28   5.5  
U41106-3|AAA82411.1|  261|Caenorhabditis elegans Hypothetical pr...    28   7.3  
AF016665-4|AAC71180.1|  347|Caenorhabditis elegans Nuclear hormo...    28   7.3  
Z75552-4|CAA99942.1|  624|Caenorhabditis elegans Hypothetical pr...    27   9.6  
U80450-3|AAB37828.1|  265|Caenorhabditis elegans C.elegans y-box...    27   9.6  

>Z81525-8|CAB04257.1|  208|Caenorhabditis elegans Hypothetical
           protein F33A8.3 protein.
          Length = 208

 Score = 31.9 bits (69), Expect = 0.45
 Identities = 21/68 (30%), Positives = 31/68 (45%), Gaps = 6/68 (8%)
 Frame = +3

Query: 330 ENPVHPVKYHGVV--CSMKENFGFIERADVVKEIFFH----FSETKCKEELTLGDDVEFI 491
           + PV   K  G V   ++K  +GFI R D  ++IF H     +    K   +LGD+ E +
Sbjct: 13  DKPVKATKVKGTVKWFNVKNGYGFINRTDTNEDIFVHQTAIINNNPNKYLRSLGDNEEVM 72

Query: 492 IQTRNGKK 515
                G K
Sbjct: 73  FDIVEGSK 80


>AF067947-6|AAO25992.1|  255|Caenorhabditis elegans Hypothetical
           protein T10B5.10 protein.
          Length = 255

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 14/29 (48%), Positives = 18/29 (62%)
 Frame = -2

Query: 503 SSLYNKLDIITESQFFFTFSFRKMKEYLF 417
           +S+   L I T+S   FTF+ RKM EY F
Sbjct: 152 TSIAALLQIATDSDLVFTFNARKMGEYCF 180


>U88173-8|AAK21380.1|  267|Caenorhabditis elegans C.elegans y-box
           protein 2 protein.
          Length = 267

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 20/52 (38%), Positives = 25/52 (48%), Gaps = 5/52 (9%)
 Frame = +3

Query: 372 SMKENFGFIERADVVKEIFFH-----FSETKCKEELTLGDDVEFIIQTRNGK 512
           S+   +GFI R D  K+IF H      S T+     TLGDD E +     GK
Sbjct: 74  SVLRRYGFISRNDGEKDIFVHQTAIAKSATEKFYLRTLGDDEEVLFDLVEGK 125


>U29535-3|AAK31458.1|  556|Caenorhabditis elegans Hypothetical
           protein C25H3.6a protein.
          Length = 556

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 13/52 (25%), Positives = 23/52 (44%)
 Frame = +2

Query: 506 WKEVACNITKLPSGSVVFEDVSPEIMRGQVLKPLERGNLVRATQNDPLPGRI 661
           W E+ C+  K P       + +P ++   V + ++RG     T N P   R+
Sbjct: 78  WSEIVCDEVKRPQSGASSRNTTPNVLSPSVARLMQRG----ITPNTPAGRRV 125


>U23486-8|AAC46779.3| 1025|Caenorhabditis elegans Nmda class
           glutamate receptor protein1 protein.
          Length = 1025

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 18/50 (36%), Positives = 28/50 (56%)
 Frame = -2

Query: 581 LFQDLHLQTQLNHLVT**CYMPLLSISSLYNKLDIITESQFFFTFSFRKM 432
           L QD+     LNH +    + PLL+ SS +  +D++T S   +T SF K+
Sbjct: 79  LTQDIVCSQMLNHSLASVIFSPLLTSSSRF--IDLVTSSA--YTLSFYKL 124


>AL033510-5|CAA22068.1|  239|Caenorhabditis elegans Hypothetical
           protein Y40H7A.9 protein.
          Length = 239

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 17/44 (38%), Positives = 22/44 (50%)
 Frame = -2

Query: 485 LDIITESQFFFTFSFRKMKEYLFYNIGTFNKTKIFFHGADNSMI 354
           L I TE  +F T    +    L +  G + +T IFF  ADNS I
Sbjct: 65  LPIFTELHYFSTSKHLRRWFALIFIAGFYWETCIFFMAADNSYI 108


>AF318613-1|AAK01101.2| 1025|Caenorhabditis elegans NMDA-type
           ionotropic glutamatereceptor NMR-1 protein.
          Length = 1025

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 18/50 (36%), Positives = 28/50 (56%)
 Frame = -2

Query: 581 LFQDLHLQTQLNHLVT**CYMPLLSISSLYNKLDIITESQFFFTFSFRKM 432
           L QD+     LNH +    + PLL+ SS +  +D++T S   +T SF K+
Sbjct: 79  LTQDIVCSQMLNHSLASVIFSPLLTSSSRF--IDLVTSSA--YTLSFYKL 124


>AF047659-15|AAC04426.1|  493|Caenorhabditis elegans Hypothetical
           protein K07H8.1 protein.
          Length = 493

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 14/30 (46%), Positives = 17/30 (56%), Gaps = 2/30 (6%)
 Frame = -2

Query: 305 CSSLI--SCNLKADSISSAKVTFPSTSSFV 222
           C  L+   CNL  +SI S  + FPSTS  V
Sbjct: 203 CKKLVISECNLSENSIDSILLRFPSTSDVV 232


>U41106-3|AAA82411.1|  261|Caenorhabditis elegans Hypothetical
           protein W06A11.3 protein.
          Length = 261

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = -1

Query: 198 TSFIGYSTCIITRSFTFYFCCYSAC 124
           TSFIG+ +C + R F F F  + +C
Sbjct: 237 TSFIGHLSCFVFRLFYFVFHRFFSC 261


>AF016665-4|AAC71180.1|  347|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 75 protein.
          Length = 347

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 13/38 (34%), Positives = 20/38 (52%)
 Frame = -1

Query: 249 DIPFNIIFCIGQEETFSTSFIGYSTCIITRSFTFYFCC 136
           D  F++I  +G E T  TSF  Y+T ++  S+     C
Sbjct: 9   DKSFHVILGVGSESTNLTSFSIYATMMMNESYVPCLVC 46


>Z75552-4|CAA99942.1|  624|Caenorhabditis elegans Hypothetical
           protein W04D2.4 protein.
          Length = 624

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 15/43 (34%), Positives = 22/43 (51%)
 Frame = -1

Query: 435 NERISLLQHRHVQ*NQNFLSWSRQLHDI*LDVRGSQNVYDKHL 307
           ++ + L  HRH+Q + + LS   QL D   D  G  N  D+ L
Sbjct: 460 DDSLQLHHHRHLQNDHHHLSTRHQLED--SDQSGPSNAVDRFL 500


>U80450-3|AAB37828.1|  265|Caenorhabditis elegans C.elegans y-box
           protein 3 protein.
          Length = 265

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 17/52 (32%), Positives = 27/52 (51%), Gaps = 5/52 (9%)
 Frame = +3

Query: 372 SMKENFGFIERADVVKEIFFH-----FSETKCKEELTLGDDVEFIIQTRNGK 512
           S+   +GFI R+D  K++F H      S+T+     TL D+ E +    +GK
Sbjct: 72  SVLRRYGFISRSDGEKDVFVHQTAISKSDTEKFYLRTLADEEEVLFDLVDGK 123


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,867,038
Number of Sequences: 27780
Number of extensions: 337217
Number of successful extensions: 760
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 726
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 760
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1592382278
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)