Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30995
         (254 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC5H10.06c |adh4||alcohol dehydrogenase Adh4|Schizosaccharomyc...    26   0.91 
SPAC3G9.06 |frs2||phenylalanine-tRNA ligase alpha subunit Frs2 |...    25   2.1  
SPAC24B11.11c |sid2||Sid2p-Mob1p kinase complex|Schizosaccharomy...    24   3.7  
SPBC365.01 |||sec14 cytosolic factor family |Schizosaccharomyces...    24   3.7  
SPAC17G6.13 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    23   6.4  
SPBC887.19 |rft1||human RFT1 ortholog |Schizosaccharomyces pombe...    23   6.4  
SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase Snf22...    23   8.5  
SPCC23B6.01c |||oxysterol binding protein |Schizosaccharomyces p...    23   8.5  
SPCC1235.05c |fft2||fun thirty related protein Fft2|Schizosaccha...    23   8.5  

>SPAC5H10.06c |adh4||alcohol dehydrogenase Adh4|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 422

 Score = 25.8 bits (54), Expect = 0.91
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = +3

Query: 12  DEALRDASGATSPPIPEH 65
           D A++DA GAT+P  P H
Sbjct: 394 DHAMKDACGATNPIQPTH 411


>SPAC3G9.06 |frs2||phenylalanine-tRNA ligase alpha subunit Frs2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 499

 Score = 24.6 bits (51), Expect = 2.1
 Identities = 12/34 (35%), Positives = 21/34 (61%), Gaps = 2/34 (5%)
 Frame = +2

Query: 110 HTSHVTCHSLYRLSHTAPGPARLATL--LIRNET 205
           HT+ V+ + LY+L+     PA+  ++  + RNET
Sbjct: 328 HTTAVSANMLYKLAQNGFHPAKYFSIDRVFRNET 361


>SPAC24B11.11c |sid2||Sid2p-Mob1p kinase complex|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 607

 Score = 23.8 bits (49), Expect = 3.7
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = +3

Query: 141 IASPIPRPAPRGWQLYSYETKHVW 212
           IASPIPR   R  +L SY+  + W
Sbjct: 84  IASPIPRGLDRSGEL-SYKDNNHW 106


>SPBC365.01 |||sec14 cytosolic factor family |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 355

 Score = 23.8 bits (49), Expect = 3.7
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = +3

Query: 186 YSYETKHVWPKGLDTRP 236
           + YE K +W KG+  RP
Sbjct: 318 FKYECKKLWRKGVALRP 334


>SPAC17G6.13 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 433

 Score = 23.0 bits (47), Expect = 6.4
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = +3

Query: 15  EALRDASGATSPPIPEH 65
           E L D+S   SPP+ EH
Sbjct: 349 EKLTDSSKQPSPPVAEH 365


>SPBC887.19 |rft1||human RFT1 ortholog |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 527

 Score = 23.0 bits (47), Expect = 6.4
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = -2

Query: 247 FFFYGLVSRPLGQTCFVSY 191
           F+FY L + P  +TC   Y
Sbjct: 122 FYFYSLPNFPYSKTCIFIY 140


>SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase
           Snf22|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1680

 Score = 22.6 bits (46), Expect = 8.5
 Identities = 12/22 (54%), Positives = 12/22 (54%)
 Frame = +1

Query: 130 SFAISPLPYRARPREAGNSTHT 195
           SFA S LP  A P    NST T
Sbjct: 309 SFAHSKLPSSANPNTPFNSTAT 330


>SPCC23B6.01c |||oxysterol binding protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 489

 Score = 22.6 bits (46), Expect = 8.5
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = +3

Query: 24  RDASGATSPPIPEHKPLP 77
           RDASG ++    EH P P
Sbjct: 425 RDASGDSTKGFAEHMPAP 442


>SPCC1235.05c |fft2||fun thirty related protein
           Fft2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1284

 Score = 22.6 bits (46), Expect = 8.5
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = +3

Query: 36  GATSPPIPEHKPLP 77
           G +S P+P + PLP
Sbjct: 113 GQSSQPVPSYNPLP 126


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 857,138
Number of Sequences: 5004
Number of extensions: 12943
Number of successful extensions: 38
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 38
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 38
length of database: 2,362,478
effective HSP length: 60
effective length of database: 2,062,238
effective search space used: 49493712
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)