Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS30995
(254 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_07_0307 + 42647006-42647202,42647287-42647866 27 1.6
06_03_1191 + 28286685-28287008,28287149-28287211,28287377-282874... 27 2.8
08_01_0788 + 7617929-7617969,7619848-7621622,7635250-7635437 26 3.6
05_02_0157 + 7171791-7172030,7172635-7172667,7172966-7173037,717... 26 3.6
04_03_0496 + 16549333-16549465,16549620-16550020,16550412-165508... 26 3.6
02_05_0054 + 25449890-25450782,25450897-25450960 26 4.8
04_04_0567 + 26284096-26284716 25 6.4
12_01_0101 - 779047-779298,779459-779711,779857-780005,780033-78... 25 8.4
02_04_0548 + 23789567-23789585,23789938-23790306,23790410-237904... 25 8.4
>01_07_0307 + 42647006-42647202,42647287-42647866
Length = 258
Score = 27.5 bits (58), Expect = 1.6
Identities = 11/38 (28%), Positives = 17/38 (44%)
Frame = +1
Query: 103 HTSHLTRHMSFAISPLPYRARPREAGNSTHTKRNTFGL 216
H +H+T LP +P AGN+ + FG+
Sbjct: 35 HVAHVTFDRFHGFQGLPVELQPEVAGNAPSASKTVFGV 72
>06_03_1191 +
28286685-28287008,28287149-28287211,28287377-28287461,
28287561-28287623,28287954-28288029,28288190-28288223,
28289553-28289659,28289738-28289807,28289852-28289950
Length = 306
Score = 26.6 bits (56), Expect = 2.8
Identities = 11/26 (42%), Positives = 13/26 (50%)
Frame = +3
Query: 138 YIASPIPRPAPRGWQLYSYETKHVWP 215
Y A P P P P G LY+ H +P
Sbjct: 16 YAAPPPPPPPPPGTSLYASYRHHAYP 41
>08_01_0788 + 7617929-7617969,7619848-7621622,7635250-7635437
Length = 667
Score = 26.2 bits (55), Expect = 3.6
Identities = 10/26 (38%), Positives = 13/26 (50%)
Frame = +2
Query: 86 TLNCHSTRHTSHVTCHSLYRLSHTAP 163
TL H+ HT H C+S+ S P
Sbjct: 602 TLEAHAHAHTQHYACNSILTPSQKRP 627
>05_02_0157 +
7171791-7172030,7172635-7172667,7172966-7173037,
7175212-7175310,7176135-7176194,7176347-7176463
Length = 206
Score = 26.2 bits (55), Expect = 3.6
Identities = 14/41 (34%), Positives = 19/41 (46%)
Frame = +1
Query: 79 ERDTELSLHTSHLTRHMSFAISPLPYRARPREAGNSTHTKR 201
++ TE L RH+SF S P + GNS TK+
Sbjct: 107 QKATESILQPVAGARHLSFLASDSPVAGEGKVEGNSPDTKK 147
>04_03_0496 + 16549333-16549465,16549620-16550020,16550412-16550880,
16552038-16552076,16553151-16553272,16553531-16553677,
16554097-16554186,16554274-16554398,16554567-16554772,
16554951-16555075,16555528-16555722,16556295-16556337,
16556762-16557267,16558198-16558570,16559772-16560062,
16560132-16561101,16561196-16561892,16562378-16562658,
16562731-16563400,16563860-16564034,16565103-16565659
Length = 2204
Score = 26.2 bits (55), Expect = 3.6
Identities = 9/19 (47%), Positives = 11/19 (57%)
Frame = +2
Query: 122 VTCHSLYRLSHTAPGPARL 178
+ CH L RL H P P +L
Sbjct: 1767 IPCHDLCRLMHFGPSPVKL 1785
>02_05_0054 + 25449890-25450782,25450897-25450960
Length = 318
Score = 25.8 bits (54), Expect = 4.8
Identities = 13/29 (44%), Positives = 20/29 (68%), Gaps = 1/29 (3%)
Frame = +1
Query: 133 FAISPLPYRARPRE-AGNSTHTKRNTFGL 216
F+ SP+PY+ +P++ AG S+H FGL
Sbjct: 48 FSSSPMPYQPQPQQPAGYSSH---QAFGL 73
>04_04_0567 + 26284096-26284716
Length = 206
Score = 25.4 bits (53), Expect = 6.4
Identities = 13/42 (30%), Positives = 20/42 (47%)
Frame = +1
Query: 106 TSHLTRHMSFAISPLPYRARPREAGNSTHTKRNTFGLKV*IP 231
T T + A+ P P +A + G H+K N G +V +P
Sbjct: 31 TMPFTAALVDAVLPAPRKAAATQGGKDRHSKVNGRGRRVRMP 72
>12_01_0101 -
779047-779298,779459-779711,779857-780005,780033-780281,
780377-780571,780681-780788,780935-781156,781669-781986,
781988-782615,783059-783135,783161-783267,783491-783619,
783763-783820,783902-783984,784458-784539,784617-784693,
784827-784910,784999-785068,785146-785234,785319-786008,
786485-786797
Length = 1410
Score = 25.0 bits (52), Expect = 8.4
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = -2
Query: 82 AQGSGLCSGMGGEVAPLASRSAS 14
AQG G C+G+GG ++ S A+
Sbjct: 692 AQGQGWCAGVGGFLSSFFSAGAA 714
>02_04_0548 +
23789567-23789585,23789938-23790306,23790410-23790495,
23791487-23791574,23791696-23791826
Length = 230
Score = 25.0 bits (52), Expect = 8.4
Identities = 10/20 (50%), Positives = 12/20 (60%)
Frame = +3
Query: 15 EALRDASGATSPPIPEHKPL 74
+ALRD S PP+ KPL
Sbjct: 34 KALRDVSNIGKPPVSTRKPL 53
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,188,099
Number of Sequences: 37544
Number of extensions: 114745
Number of successful extensions: 320
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 315
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 320
length of database: 14,793,348
effective HSP length: 63
effective length of database: 12,428,076
effective search space used: 260989596
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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