Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30995
         (254 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z73098-10|CAA97336.2|  391|Caenorhabditis elegans Hypothetical p...    25   7.4  
AL023828-7|CAA19452.1|  881|Caenorhabditis elegans Hypothetical ...    25   7.4  
AF000263-6|AAO21394.1|  496|Caenorhabditis elegans Phenylalanyl ...    25   9.8  
AF000263-5|AAG00015.1|  552|Caenorhabditis elegans Phenylalanyl ...    25   9.8  

>Z73098-10|CAA97336.2|  391|Caenorhabditis elegans Hypothetical
           protein T21C9.9 protein.
          Length = 391

 Score = 25.0 bits (52), Expect = 7.4
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = +3

Query: 135 RYIASPIPRPAPRGWQ 182
           +YI+ P PRPAP  +Q
Sbjct: 107 QYISRPAPRPAPAPYQ 122


>AL023828-7|CAA19452.1|  881|Caenorhabditis elegans Hypothetical
           protein Y17G7B.5a protein.
          Length = 881

 Score = 25.0 bits (52), Expect = 7.4
 Identities = 10/14 (71%), Positives = 11/14 (78%)
 Frame = -1

Query: 170 RGRARYGRGDIAND 129
           RGR R GRGD A+D
Sbjct: 119 RGRGRRGRGDAADD 132


>AF000263-6|AAO21394.1|  496|Caenorhabditis elegans Phenylalanyl (f)
           trna synthetaseprotein 1, isoform b protein.
          Length = 496

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 12/34 (35%), Positives = 21/34 (61%), Gaps = 2/34 (5%)
 Frame = +2

Query: 110 HTSHVTCHSLYRLSHTAPGPARLATL--LIRNET 205
           HT+ V+   LY+L+     P++L ++  + RNET
Sbjct: 327 HTTAVSARQLYQLAQEGFRPSKLFSIDRVFRNET 360


>AF000263-5|AAG00015.1|  552|Caenorhabditis elegans Phenylalanyl (f)
           trna synthetaseprotein 1, isoform a protein.
          Length = 552

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 12/34 (35%), Positives = 21/34 (61%), Gaps = 2/34 (5%)
 Frame = +2

Query: 110 HTSHVTCHSLYRLSHTAPGPARLATL--LIRNET 205
           HT+ V+   LY+L+     P++L ++  + RNET
Sbjct: 383 HTTAVSARQLYQLAQEGFRPSKLFSIDRVFRNET 416


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,889,220
Number of Sequences: 27780
Number of extensions: 79414
Number of successful extensions: 206
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 192
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 206
length of database: 12,740,198
effective HSP length: 63
effective length of database: 10,990,058
effective search space used: 230791218
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)