Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30992
         (404 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_0607 + 26083072-26084154                                         28   3.2  
01_06_0789 - 32010131-32010330,32010438-32010866,32011658-320117...    27   4.3  
06_03_0947 + 26248378-26248494,26248600-26248764,26248843-262489...    27   7.5  
02_02_0453 + 10420585-10421661,10422015-10422146,10422232-104224...    27   7.5  
07_03_0348 + 17044542-17044736,17045037-17045141                       26   9.9  
06_02_0208 - 13026296-13026654,13027394-13027497,13028109-130282...    26   9.9  

>03_05_0607 + 26083072-26084154
          Length = 360

 Score = 27.9 bits (59), Expect = 3.2
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = -3

Query: 75 SAAHGRRPVAYSYNRYASLEKSM 7
          SA HGRRP    Y+R   L+K+M
Sbjct: 5  SAGHGRRPKKKLYHREPGLDKAM 27


>01_06_0789 -
           32010131-32010330,32010438-32010866,32011658-32011752,
           32011836-32011933,32012586-32012942,32013615-32013792,
           32013856-32013936,32014441-32014548,32014916-32015178
          Length = 602

 Score = 27.5 bits (58), Expect = 4.3
 Identities = 8/24 (33%), Positives = 14/24 (58%)
 Frame = -2

Query: 322 CLRRLCTCAD*NVVALSNYECVTC 251
           CL++ C C   N++   N +C+ C
Sbjct: 233 CLKKYCECFQANILCSENCKCMDC 256


>06_03_0947 +
           26248378-26248494,26248600-26248764,26248843-26248952,
           26249065-26249179,26249310-26249408,26249485-26249694,
           26249802-26250965
          Length = 659

 Score = 26.6 bits (56), Expect = 7.5
 Identities = 14/39 (35%), Positives = 21/39 (53%)
 Frame = +1

Query: 37  VRIGHRTTSMGGGKEKVPWY*NLSFLNHFHRHRSLQLSR 153
           V +G +    G  +EK   Y +LSFL  +HR  +  L+R
Sbjct: 159 VHVGIKGQYAGSNEEKHFIYNHLSFLVKYHRDENTDLAR 197


>02_02_0453 +
           10420585-10421661,10422015-10422146,10422232-10422456,
           10422555-10422680,10422777-10422839,10423214-10423296,
           10424078-10424309,10424421-10424489,10424532-10424731,
           10424819-10424894,10425015-10425081,10425194-10425471,
           10425600-10425787,10426235-10426391,10426496-10426741
          Length = 1072

 Score = 26.6 bits (56), Expect = 7.5
 Identities = 12/39 (30%), Positives = 20/39 (51%)
 Frame = -2

Query: 349 LESVSMARACLRRLCTCAD*NVVALSNYECVTCCRCAKL 233
           ++S+S +      LCTCAD + + +    C  CC  A +
Sbjct: 813 MKSLSQSTCVPEVLCTCADQSYLGIL-LNCCLCCSLASI 850


>07_03_0348 + 17044542-17044736,17045037-17045141
          Length = 99

 Score = 26.2 bits (55), Expect = 9.9
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = -3

Query: 102 ILIPRHFFLSAAHGRRPVAYS 40
           IL P  FFL+  H +RP+ +S
Sbjct: 75  ILFPISFFLTILHSKRPLIFS 95


>06_02_0208 -
           13026296-13026654,13027394-13027497,13028109-13028200,
           13028418-13028774,13029932-13030109,13030454-13030507,
           13030701-13030784,13031521-13031714
          Length = 473

 Score = 26.2 bits (55), Expect = 9.9
 Identities = 8/24 (33%), Positives = 13/24 (54%)
 Frame = -2

Query: 322 CLRRLCTCAD*NVVALSNYECVTC 251
           CL++ C C   N++   N +C  C
Sbjct: 193 CLKKYCECFQANILCSKNCKCQDC 216


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,379,805
Number of Sequences: 37544
Number of extensions: 182928
Number of successful extensions: 423
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 421
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 423
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 706675332
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)