Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30992
         (404 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U64845-12|AAC48025.1|  475|Caenorhabditis elegans Hypothetical p...    29   1.7  
Z81594-7|CAJ55256.1| 4404|Caenorhabditis elegans Hypothetical pr...    27   5.1  
Z80221-3|CAB02312.2| 4404|Caenorhabditis elegans Hypothetical pr...    27   5.1  
AL032619-1|CAJ55259.1| 4404|Caenorhabditis elegans Hypothetical ...    27   5.1  
S66936-1|AAB28820.1|  360|Caenorhabditis elegans Egl-43 protein.       27   6.8  
S66757-1|AAB28819.1|  581|Caenorhabditis elegans Egl-43 protein.       27   6.8  
U67947-1|AAB07557.2| 1147|Caenorhabditis elegans Hypothetical pr...    26   9.0  
U53332-11|AAK31531.1|  668|Caenorhabditis elegans Protein tyrosi...    26   9.0  
AF015882-1|AAC21678.1|  668|Caenorhabditis elegans protein tyros...    26   9.0  

>U64845-12|AAC48025.1|  475|Caenorhabditis elegans Hypothetical
           protein F45F2.1 protein.
          Length = 475

 Score = 28.7 bits (61), Expect = 1.7
 Identities = 12/34 (35%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
 Frame = +2

Query: 59  RPWAAERKKCLGIKIYHS*IIFIDIGH-CSFHVH 157
           RPW    + CL I  + + ++F+ I H   FH H
Sbjct: 33  RPWICILRTCLYIIFHVTQVVFVSISHRVEFHYH 66


>Z81594-7|CAJ55256.1| 4404|Caenorhabditis elegans Hypothetical protein
            ZC247.1 protein.
          Length = 4404

 Score = 27.1 bits (57), Expect = 5.1
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = +1

Query: 250  NTSHTHNLTKQLRSSPHTCTAAANT 324
            N  H+H+  +Q R SPHT T    T
Sbjct: 4151 NLIHSHSSPRQRRLSPHTWTTVRET 4175


>Z80221-3|CAB02312.2| 4404|Caenorhabditis elegans Hypothetical protein
            ZC247.1 protein.
          Length = 4404

 Score = 27.1 bits (57), Expect = 5.1
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = +1

Query: 250  NTSHTHNLTKQLRSSPHTCTAAANT 324
            N  H+H+  +Q R SPHT T    T
Sbjct: 4151 NLIHSHSSPRQRRLSPHTWTTVRET 4175


>AL032619-1|CAJ55259.1| 4404|Caenorhabditis elegans Hypothetical
            protein ZC247.1 protein.
          Length = 4404

 Score = 27.1 bits (57), Expect = 5.1
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = +1

Query: 250  NTSHTHNLTKQLRSSPHTCTAAANT 324
            N  H+H+  +Q R SPHT T    T
Sbjct: 4151 NLIHSHSSPRQRRLSPHTWTTVRET 4175


>S66936-1|AAB28820.1|  360|Caenorhabditis elegans Egl-43 protein.
          Length = 360

 Score = 26.6 bits (56), Expect = 6.8
 Identities = 13/41 (31%), Positives = 16/41 (39%)
 Frame = +1

Query: 253 TSHTHNLTKQLRSSPHTCTAAANTHVPY*RSPNTC*L*NKC 375
           T H H+  + L +S  T T     H P    P T     KC
Sbjct: 282 TPHNHHRQRSLHNSTSTSTTTTTVHHPLLHLPGTSFRCQKC 322


>S66757-1|AAB28819.1|  581|Caenorhabditis elegans Egl-43 protein.
          Length = 581

 Score = 26.6 bits (56), Expect = 6.8
 Identities = 13/41 (31%), Positives = 16/41 (39%)
 Frame = +1

Query: 253 TSHTHNLTKQLRSSPHTCTAAANTHVPY*RSPNTC*L*NKC 375
           T H H+  + L +S  T T     H P    P T     KC
Sbjct: 503 TPHNHHRQRSLHNSTSTSTTTTTVHHPLLHLPGTSFRCQKC 543


>U67947-1|AAB07557.2| 1147|Caenorhabditis elegans Hypothetical
           protein H03E18.1 protein.
          Length = 1147

 Score = 26.2 bits (55), Expect = 9.0
 Identities = 11/35 (31%), Positives = 19/35 (54%)
 Frame = -2

Query: 253 CCRCAKLKILL*PKFA*SNLSLVVECRCVCSIMYV 149
           C R  + + LL   F   ++  V +CRC+C+  Y+
Sbjct: 242 CYRTIRHRYLLGADFEEHDVDSVNDCRCLCAATYL 276


>U53332-11|AAK31531.1|  668|Caenorhabditis elegans Protein tyrosine
           phosphatase protein2 protein.
          Length = 668

 Score = 26.2 bits (55), Expect = 9.0
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = -3

Query: 96  IPRHFFLSAAHGRRPVAYSYNRYASL 19
           +P   +LS   GRRPV    NRY ++
Sbjct: 276 LPAEQYLSKREGRRPVNAEKNRYKNI 301


>AF015882-1|AAC21678.1|  668|Caenorhabditis elegans protein tyrosine
           phosphatase protein.
          Length = 668

 Score = 26.2 bits (55), Expect = 9.0
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = -3

Query: 96  IPRHFFLSAAHGRRPVAYSYNRYASL 19
           +P   +LS   GRRPV    NRY ++
Sbjct: 276 LPAEQYLSKREGRRPVNAEKNRYKNI 301


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,048,923
Number of Sequences: 27780
Number of extensions: 172932
Number of successful extensions: 384
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 383
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 384
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 641068680
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)