Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30991
         (802 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1F8.05 |isp3|meu4|sequence orphan|Schizosaccharomyces pombe|...    29   0.77 
SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces po...    28   1.8  
SPBC106.14c |sda1||SDA1 family protein|Schizosaccharomyces pombe...    27   4.1  
SPBC1105.10 |rav1||RAVE complex subunit Rav1 |Schizosaccharomyce...    26   5.4  
SPAC22E12.04 |ccs1|pccs, pccs|metallochaperone Ccs1 |Schizosacch...    26   7.2  
SPAC1F3.02c |mkh1||MEK kinase |Schizosaccharomyces pombe|chr 1||...    25   9.5  
SPBC119.15 |||AAA family ATPase, unknown biological role|Schizos...    25   9.5  

>SPAC1F8.05 |isp3|meu4|sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 182

 Score = 29.1 bits (62), Expect = 0.77
 Identities = 12/29 (41%), Positives = 15/29 (51%), Gaps = 2/29 (6%)
 Frame = -2

Query: 123 TWWYCGP--RH*SELSRHKHRWRYTSQSD 43
           T+WY  P  RH  E  +  H W Y+S  D
Sbjct: 44  TYWYPPPPPRHHKEHKKSHHHWEYSSDDD 72


>SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 897

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = -1

Query: 289 IPPPAPSSGNEGQLSTFSHVAHDVKKPVPHATGEVRHL 176
           +PPP+ SS   G +ST S   ++ K    H T E+  L
Sbjct: 183 LPPPSSSSLPTGTISTNSFCPYERKVQPEHVTKELHQL 220


>SPBC106.14c |sda1||SDA1 family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 719

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = +3

Query: 90  LISAVVRNTTTFKSSITERAEKCLTALKARCLTSPV 197
           LI  + +N T F   + E+   CL  LK + + SP+
Sbjct: 82  LIELLQKNHTIFPFELCEKIVLCLVLLKNKTVISPI 117


>SPBC1105.10 |rav1||RAVE complex subunit Rav1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1297

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = +2

Query: 671 QN*TFLFTKILLSLHLCAEYDI 736
           +N  FLFT ILL  +LC + D+
Sbjct: 777 RNQPFLFTNILLRFYLCLKDDV 798


>SPAC22E12.04 |ccs1|pccs, pccs|metallochaperone Ccs1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 297

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = +1

Query: 448 DADDDHRVTLAEWGKCLELDGWKWRSA 528
           D DD ++ TL +  + L ++ WKW +A
Sbjct: 10  DCDDVNKNTLEQEFQDLNIEDWKWDAA 36


>SPAC1F3.02c |mkh1||MEK kinase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1116

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 13/38 (34%), Positives = 17/38 (44%)
 Frame = -1

Query: 295 GLIPPPAPSSGNEGQLSTFSHVAHDVKKPVPHATGEVR 182
           G   P +PSS     + T + VAH    P P  T  +R
Sbjct: 517 GSSAPQSPSSNTSASVLTRNFVAHRDPPPPPTETSSLR 554


>SPBC119.15 |||AAA family ATPase, unknown biological
           role|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 367

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 12/46 (26%), Positives = 24/46 (52%)
 Frame = -1

Query: 139 VILDLNVVVLRTTALIRVVEA*ASLAVYFAIRLPGFVEVCAHHASG 2
           ++  LN+ V +   +++++E  A    +  I  PG +E+    ASG
Sbjct: 80  IMTSLNLFVTKFDQVLKILEKRAPTVDHILIDTPGQIEIFQWSASG 125


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,085,581
Number of Sequences: 5004
Number of extensions: 59616
Number of successful extensions: 149
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 133
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 148
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 388424860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)