Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS30991
(802 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_01_0355 - 3122374-3122520,3122912-3123047,3123124-3123221,312... 33 0.35
08_01_0961 - 9622444-9622928,9623011-9623102,9623862-9624002,962... 31 1.1
01_01_0030 + 226182-226634,226742-226864,227557-227785,228653-22... 31 1.1
05_02_0145 + 7067521-7068993 30 1.9
04_03_0582 + 17528335-17529790,17529913-17531651,17531814-175320... 30 1.9
03_03_0008 - 13674602-13674708,13675272-13675439,13676169-136767... 30 1.9
05_01_0079 + 531617-531734,531987-532059,532152-532261,532400-53... 29 3.3
08_02_0739 + 20584264-20584626,20586943-20587011,20587696-205880... 29 4.3
05_03_0459 - 14284513-14286336 29 4.3
11_06_0344 + 22540436-22540737,22541304-22543545 28 7.5
04_04_0157 + 23165638-23166633 28 9.9
01_01_0975 - 7686297-7686458,7687117-7687245,7687754-7687831,768... 28 9.9
>08_01_0355 -
3122374-3122520,3122912-3123047,3123124-3123221,
3123724-3123801,3123876-3123945,3124452-3124516,
3124606-3124686,3124822-3124926,3125002-3125085,
3125175-3125250,3125358-3125436,3125526-3125646,
3125768-3125827
Length = 399
Score = 32.7 bits (71), Expect = 0.35
Identities = 17/38 (44%), Positives = 22/38 (57%)
Frame = -3
Query: 509 PSSSRHLPHSARVTRWSSSASQRSRNGAMQCSRAISGA 396
P+SS LP S +V RWSSSA+ +R A R + A
Sbjct: 9 PTSSSLLPASLQVGRWSSSAAMSARPVAFSLRRPVLAA 46
>08_01_0961 -
9622444-9622928,9623011-9623102,9623862-9624002,
9624460-9624506,9624581-9624639,9624780-9624940,
9625021-9625196,9625284-9625355,9625820-9625879,
9625997-9626191
Length = 495
Score = 31.1 bits (67), Expect = 1.1
Identities = 23/76 (30%), Positives = 31/76 (40%), Gaps = 3/76 (3%)
Frame = +3
Query: 72 AYASTTLISAV--VRNTTTFKSSITERA-EKCLTALKARCLTSPVACGTGFLTSCATWLN 242
+Y S L+S V R K+S++ + C L C S CG F T CA +L
Sbjct: 290 SYLSLPLMSIVKIARECGWRKTSVSSVCHDPCAICLDTECTVSAEGCGHEFCTKCALYLC 349
Query: 243 VES*PSLPEDGAGGGI 290
+ S G G I
Sbjct: 350 ATASSSTSIRGVPGSI 365
>01_01_0030 +
226182-226634,226742-226864,227557-227785,228653-228696
Length = 282
Score = 31.1 bits (67), Expect = 1.1
Identities = 13/32 (40%), Positives = 16/32 (50%)
Frame = -1
Query: 286 PPPAPSSGNEGQLSTFSHVAHDVKKPVPHATG 191
PPPA G G + SH D ++P PH G
Sbjct: 64 PPPAYGGGGYGNVVHVSHEVSDHQRPTPHYGG 95
>05_02_0145 + 7067521-7068993
Length = 490
Score = 30.3 bits (65), Expect = 1.9
Identities = 15/42 (35%), Positives = 19/42 (45%)
Frame = -1
Query: 289 IPPPAPSSGNEGQLSTFSHVAHDVKKPVPHATGEVRHLAFSA 164
+P PAP+ G S AH V + VP R LA +A
Sbjct: 85 LPAPAPADALPGDASVRERAAHAVARSVPRVRDVARSLAATA 126
>04_03_0582 +
17528335-17529790,17529913-17531651,17531814-17532035,
17532062-17533525
Length = 1626
Score = 30.3 bits (65), Expect = 1.9
Identities = 18/58 (31%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
Frame = +3
Query: 42 NRIAKYTASDAYASTTLISAVVRNTTTFKSSITERAEK-CLTALKARCLTSPVACGTG 212
++I S + S +I A+ RN + + S+ E + C++ K + LT+PVA G G
Sbjct: 380 HKIGPVEESASLPSMEMIPAI-RNLNSHQESLEESSSADCISPTKRKALTAPVAKGLG 436
>03_03_0008 - 13674602-13674708,13675272-13675439,13676169-13676787,
13676868-13677330,13677855-13678036,13678093-13678235,
13678315-13678423,13679000-13679456,13680490-13682473,
13682507-13682626,13682920-13682971
Length = 1467
Score = 30.3 bits (65), Expect = 1.9
Identities = 18/54 (33%), Positives = 26/54 (48%), Gaps = 2/54 (3%)
Frame = -1
Query: 286 PPPAPSSG--NEGQLSTFSHVAHDVKKPVPHATGEVRHLAFSAVRHFSARSVIL 131
PPP P SG + S +S H ++ PVPH G + + HF S++L
Sbjct: 1400 PPPGPCSGWSMPPRSSNYSPSRHSMEPPVPHVGGSM----LLSAGHFEMLSLML 1449
>05_01_0079 +
531617-531734,531987-532059,532152-532261,532400-532543,
532628-532736,532836-533182,533260-533333,533478-533782,
534168-534294,534385-534414,534589-534837
Length = 561
Score = 29.5 bits (63), Expect = 3.3
Identities = 14/34 (41%), Positives = 18/34 (52%), Gaps = 2/34 (5%)
Frame = +1
Query: 412 LEHCIAPFLDRCDADDDHRVTLA--EWGKCLELD 507
L H + FL CD+ D H L+ EW L+LD
Sbjct: 322 LSHKVVVFLSTCDSVDFHHTVLSQLEWSPGLQLD 355
>08_02_0739 +
20584264-20584626,20586943-20587011,20587696-20588006,
20588447-20588648,20588887-20588958
Length = 338
Score = 29.1 bits (62), Expect = 4.3
Identities = 23/69 (33%), Positives = 34/69 (49%), Gaps = 2/69 (2%)
Frame = +2
Query: 14 VCTNFNETWQSDCEVYRQRCLCLDNSDQCRGPQYHHVQIEYYGTCREMPDCTESEM--SD 187
+CTN + DC R C D+ QCRG + + E G C ++ + +E+E+ SD
Sbjct: 232 MCTNVRLVF--DCT--RDGCRRKDSWAQCRGCFFCVARCETCGGCIDLEELSETELACSD 287
Query: 188 FPRRMRDWL 214
F M WL
Sbjct: 288 F-LCMECWL 295
>05_03_0459 - 14284513-14286336
Length = 607
Score = 29.1 bits (62), Expect = 4.3
Identities = 19/46 (41%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
Frame = -3
Query: 509 PSSSRHLPHSARVT--RWSSSASQRSRNGAMQCSRAISGALMGNSS 378
P S + P S R + R SS+S S NG+ S + SGA G+SS
Sbjct: 256 PVSVNNFPDSPRSSSSRSDSSSSSSSSNGSGSSSSSSSGASSGSSS 301
>11_06_0344 + 22540436-22540737,22541304-22543545
Length = 847
Score = 28.3 bits (60), Expect = 7.5
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = +3
Query: 120 TFKSSITERAEKCLTALKARCLTSP 194
T +S ERAE+C + L RC+ P
Sbjct: 299 TLQSGFEERAEECFSQLVQRCIIRP 323
>04_04_0157 + 23165638-23166633
Length = 331
Score = 27.9 bits (59), Expect = 9.9
Identities = 16/49 (32%), Positives = 19/49 (38%)
Frame = -1
Query: 277 APSSGNEGQLSTFSHVAHDVKKPVPHATGEVRHLAFSAVRHFSARSVIL 131
A S G + F H H + P P A HL R F AR +L
Sbjct: 72 ATSFGRVRLSAAFVHPGHRLPAPSPSAAAAAVHLCRVCGRRFRARDTLL 120
>01_01_0975 -
7686297-7686458,7687117-7687245,7687754-7687831,
7688011-7688469,7690648-7690788,7691771-7692421
Length = 539
Score = 27.9 bits (59), Expect = 9.9
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = -1
Query: 289 IPPPAPSSGNEGQLSTFSHVAHDVKKPVPHATGEV 185
IPPP+P GN+ AH K+ + A G+V
Sbjct: 464 IPPPSPPQGNKLAALQLQLDAHPSKESIDAAIGDV 498
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,806,949
Number of Sequences: 37544
Number of extensions: 468182
Number of successful extensions: 1378
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1330
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1377
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2174172540
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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