Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30989
         (789 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    27   4.0  
SPBC23E6.09 |ssn6||transcriptional corepressor Ssn6|Schizosaccha...    26   7.1  
SPBC14F5.02 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    26   7.1  

>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 534

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 16/50 (32%), Positives = 25/50 (50%)
 Frame = -3

Query: 745 ASLHSRSREPNGKQSTSPKTRHFGSSQSTNGAFTCLKHRSSFSSNPSVAS 596
           +S  S S  P    ST   +    SS S+  + + +   SSFSS+P+ +S
Sbjct: 291 SSSSSSSSSPTSTSSTISSSSSSSSSFSSTLSSSSMSSSSSFSSSPTSSS 340


>SPBC23E6.09 |ssn6||transcriptional corepressor
           Ssn6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1102

 Score = 25.8 bits (54), Expect = 7.1
 Identities = 8/14 (57%), Positives = 12/14 (85%)
 Frame = -1

Query: 690 KHVISDPPNPLTVL 649
           +H++ +PP PLTVL
Sbjct: 499 RHILDNPPKPLTVL 512


>SPBC14F5.02 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 515

 Score = 25.8 bits (54), Expect = 7.1
 Identities = 25/74 (33%), Positives = 37/74 (50%)
 Frame = -2

Query: 533 PIQYKYELILRYRER*KTRTKHTDFLSGSRFRSGGRFCEARLLLGLVLATSSNLSPVSSP 354
           P  YK+  +L  R R  T+T HT  LS S   S  +   +  LL +  ++ S +   SS 
Sbjct: 338 PFTYKHPPVLITR-RTPTKT-HTKQLSSSGNVSAAQSISSLNLLEISASSPSYVPSGSSF 395

Query: 353 TNSANLE*PLEVTI 312
           +  ANL  PL+ +I
Sbjct: 396 SVRANLYNPLDFSI 409


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,165,960
Number of Sequences: 5004
Number of extensions: 63104
Number of successful extensions: 162
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 157
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 162
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 383374054
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)