Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30989
         (789 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_06_0073 + 19817084-19817388,19817777-19818023                       29   5.6  
10_01_0038 + 437738-438122,439215-439501,440111-440375,440687-44...    29   5.6  
11_05_0068 - 18782658-18782984,18784634-18784783,18784853-187857...    28   7.4  
03_06_0233 + 32530174-32530492,32531081-32531127,32531277-325314...    28   7.4  

>11_06_0073 + 19817084-19817388,19817777-19818023
          Length = 183

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = -2

Query: 653 CFYVPQAQVIVLVEPVGCVTLSHFF 579
           C+ VPQA + V + PV C   S +F
Sbjct: 120 CYKVPQADMAVQLSPVACAVCSAWF 144


>10_01_0038 +
           437738-438122,439215-439501,440111-440375,440687-440784
          Length = 344

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 15/49 (30%), Positives = 19/49 (38%)
 Frame = -3

Query: 745 ASLHSRSREPNGKQSTSPKTRHFGSSQSTNGAFTCLKHRSSFSSNPSVA 599
           +S  S  R   G  S  P TR  G   S     T   HR   + NP ++
Sbjct: 239 SSARSGGRGGGGDDSALPSTRSGGKGDSGGSVATASPHRLQMAGNPRLS 287


>11_05_0068 -
           18782658-18782984,18784634-18784783,18784853-18785716,
           18785877-18786005,18786112-18786188,18786507-18786607,
           18786772-18786896
          Length = 590

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = -1

Query: 510 NFTLSRTLKNSH*AH*FSQWIAFPIR 433
           +FTL R L N   AH   +WI F +R
Sbjct: 219 SFTLKRNLNNHKYAHYIDRWIYFAVR 244


>03_06_0233 +
           32530174-32530492,32531081-32531127,32531277-32531413,
           32531673-32531841,32532598-32532885,32533021-32533107,
           32533454-32534152,32534244-32534735
          Length = 745

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 16/48 (33%), Positives = 26/48 (54%)
 Frame = -3

Query: 736 HSRSREPNGKQSTSPKTRHFGSSQSTNGAFTCLKHRSSFSSNPSVASL 593
           HS   E NG  S+  K R  GSS+  + +F  L ++   S N +++S+
Sbjct: 519 HSLDPELNGSPSSKDKLRKDGSSKLLSHSFKDLGNKDIRSDNVALSSV 566


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,770,427
Number of Sequences: 37544
Number of extensions: 391910
Number of successful extensions: 898
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 881
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 898
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2127163404
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)