Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30989
         (789 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325082-1|ABD14096.1|  179|Apis mellifera complementary sex det...    22   5.7  
DQ325077-1|ABD14091.1|  181|Apis mellifera complementary sex det...    22   7.5  
DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex det...    22   7.5  
AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex det...    22   7.5  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              21   9.9  

>DQ325082-1|ABD14096.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 22.2 bits (45), Expect = 5.7
 Identities = 13/32 (40%), Positives = 15/32 (46%)
 Frame = -3

Query: 730 RSREPNGKQSTSPKTRHFGSSQSTNGAFTCLK 635
           RSREP    S S KT H  ++   N    C K
Sbjct: 75  RSREPKIISSLSNKTIHNNNNYKYNYNNNCKK 106


>DQ325077-1|ABD14091.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 21.8 bits (44), Expect = 7.5
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = -3

Query: 730 RSREPNGKQSTSPKTRHFGSSQSTN 656
           RSREP    S S KT H  ++ + N
Sbjct: 75  RSREPKIISSLSNKTIHNNNNYNNN 99


>DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex
           determiner protein.
          Length = 191

 Score = 21.8 bits (44), Expect = 7.5
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = -3

Query: 730 RSREPNGKQSTSPKTRHFGSSQSTN 656
           RSREP    S S KT H  ++ + N
Sbjct: 75  RSREPKIISSLSNKTIHNNNNYNNN 99


>AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex
           determiner protein.
          Length = 426

 Score = 21.8 bits (44), Expect = 7.5
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = -3

Query: 730 RSREPNGKQSTSPKTRHFGSSQSTN 656
           RSREP    S S KT H  ++ + N
Sbjct: 308 RSREPKIISSLSNKTIHNNNNYNNN 332


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 21.4 bits (43), Expect = 9.9
 Identities = 11/28 (39%), Positives = 14/28 (50%)
 Frame = -2

Query: 770 NIQCLVQSRVTTFPIPRAEWKAVDVAQN 687
           NI+C V       P+PR +W   D A N
Sbjct: 420 NIRCHVAGE----PLPRVQWLKNDEALN 443


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 214,485
Number of Sequences: 438
Number of extensions: 4754
Number of successful extensions: 13
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24882285
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)