Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30988
         (344 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF393494-1|AAL60419.1|  144|Apis mellifera odorant binding prote...    22   1.8  
AF166496-1|AAD51944.1|  144|Apis mellifera pheromone-binding pro...    22   1.8  
AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier...    22   2.3  
AM420631-1|CAM06631.1|  153|Apis mellifera bursicon subunit alph...    21   3.1  
AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      21   3.1  

>AF393494-1|AAL60419.1|  144|Apis mellifera odorant binding protein
           ASP1 protein.
          Length = 144

 Score = 22.2 bits (45), Expect = 1.8
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = +2

Query: 230 CLLSSHKDKSTRFMYL*CCIETNASNVIFVL 322
           CL +S  D   +   L  C++ +A +V FV+
Sbjct: 114 CLPTSGSDNCNKIYNLAKCVQESAPDVWFVI 144


>AF166496-1|AAD51944.1|  144|Apis mellifera pheromone-binding
           protein ASP1 protein.
          Length = 144

 Score = 22.2 bits (45), Expect = 1.8
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = +2

Query: 230 CLLSSHKDKSTRFMYL*CCIETNASNVIFVL 322
           CL +S  D   +   L  C++ +A +V FV+
Sbjct: 114 CLPTSGSDNCNKIYNLAKCVQESAPDVWFVI 144


>AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier
           protein JHBP-1 protein.
          Length = 253

 Score = 21.8 bits (44), Expect = 2.3
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = -3

Query: 285 QHYKYINLVDLSL*LLNKHYERRFKKSLVSVSTYS 181
           Q YK I L  L+  L  K+Y   + K ++S  +Y+
Sbjct: 88  QEYKNIKLYGLTKNLEIKNYNIDWDKCILSSESYN 122


>AM420631-1|CAM06631.1|  153|Apis mellifera bursicon subunit alpha
           protein precursor protein.
          Length = 153

 Score = 21.4 bits (43), Expect = 3.1
 Identities = 8/24 (33%), Positives = 13/24 (54%), Gaps = 1/24 (4%)
 Frame = +3

Query: 108 IWS-RRNCNICHRPGKRKNIINFF 176
           IW   R+C  C   G+R+  ++ F
Sbjct: 68  IWQMERSCMCCQESGEREASVSLF 91


>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 21.4 bits (43), Expect = 3.1
 Identities = 7/20 (35%), Positives = 14/20 (70%)
 Frame = -3

Query: 324 INTKITLEAFVSMQHYKYIN 265
           ++TK+TL+     QH++ +N
Sbjct: 381 LSTKLTLKRHKEQQHFQPLN 400


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 81,546
Number of Sequences: 438
Number of extensions: 1387
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  7812315
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)