Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30983
         (407 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_1018 - 7964752-7964847,7964976-7967048                           28   3.3  
04_03_0129 - 11554917-11555033,11555470-11555613,11555807-115559...    27   5.7  

>06_01_1018 - 7964752-7964847,7964976-7967048
          Length = 722

 Score = 27.9 bits (59), Expect = 3.3
 Identities = 12/19 (63%), Positives = 16/19 (84%)
 Frame = +2

Query: 2  SIVLFLVIPLLNILVLSHE 58
          SIV FLV+ L ++L+LSHE
Sbjct: 7  SIVSFLVLLLFHVLILSHE 25


>04_03_0129 -
           11554917-11555033,11555470-11555613,11555807-11555999,
           11556083-11556139,11556300-11556403,11556882-11556953,
           11557069-11557187,11557639-11557783,11558527-11558672,
           11558758-11558827,11559000-11559056,11559081-11559228,
           11559311-11559432,11559649-11559845,11560296-11560350,
           11560468-11560680,11561239-11561386,11561515-11561585,
           11563286-11563316,11563532-11563623,11565621-11565688,
           11567895-11568069
          Length = 847

 Score = 27.1 bits (57), Expect = 5.7
 Identities = 11/43 (25%), Positives = 28/43 (65%), Gaps = 2/43 (4%)
 Frame = +2

Query: 215 RLQIVQDKYIRTNFYLDFKTIMIYFTVSNIPFS--AFTDENVL 337
           +++++ D+Y++++ ++D   ++   + SN+P S    TDE +L
Sbjct: 101 QIRMLPDEYVQSSCFIDVHELLAPESQSNLPLSKHVHTDEYIL 143


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,569,216
Number of Sequences: 37544
Number of extensions: 142420
Number of successful extensions: 237
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 237
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 237
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 718652880
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)