Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30983
         (407 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U50301-11|AAB37048.1|  269|Caenorhabditis elegans Hypothetical p...    29   1.3  
AC024859-22|ABA00159.2|  183|Caenorhabditis elegans Twik family ...    27   3.9  
AC024859-21|AAK29962.4|  490|Caenorhabditis elegans Twik family ...    27   3.9  
AF040659-3|AAK39392.1|  919|Caenorhabditis elegans Hypothetical ...    27   5.2  
AF016448-16|AAM45377.1|  394|Caenorhabditis elegans Atg (autopha...    27   6.9  
AF016448-15|AAB65961.1|  412|Caenorhabditis elegans Atg (autopha...    27   6.9  
AF003389-8|AAC71131.1|  214|Caenorhabditis elegans Hypothetical ...    27   6.9  
AL021479-1|CAA16321.2|  346|Caenorhabditis elegans Hypothetical ...    26   9.1  
AF068721-5|AAC19259.1| 1475|Caenorhabditis elegans Holocentric c...    26   9.1  

>U50301-11|AAB37048.1|  269|Caenorhabditis elegans Hypothetical
           protein F20D6.1 protein.
          Length = 269

 Score = 29.1 bits (62), Expect = 1.3
 Identities = 14/45 (31%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
 Frame = +2

Query: 233 DKYIRTNF-YLDFKTIMIYFTVSNIPFSAFTDENVLDTQFLLLKI 364
           DK ++ N  Y+ +K ++IYF  S +  +  + +NV    F  LK+
Sbjct: 66  DKSVKPNVGYMYYKLVLIYFPRSKLGINVKSYQNVDSATFFFLKL 110


>AC024859-22|ABA00159.2|  183|Caenorhabditis elegans Twik family of
           potassium channelsprotein 45, isoform b protein.
          Length = 183

 Score = 27.5 bits (58), Expect = 3.9
 Identities = 10/32 (31%), Positives = 20/32 (62%)
 Frame = +1

Query: 238 IHTYKFLS*FQNYYDLFYSFEYSFFRVHGRKR 333
           ++T  + + +Q++Y+L YS E    R+H  +R
Sbjct: 25  VNTSIYSTLYQSFYNLIYSLEDQLDRIHNSRR 56


>AC024859-21|AAK29962.4|  490|Caenorhabditis elegans Twik family of
           potassium channelsprotein 45, isoform a protein.
          Length = 490

 Score = 27.5 bits (58), Expect = 3.9
 Identities = 10/32 (31%), Positives = 20/32 (62%)
 Frame = +1

Query: 238 IHTYKFLS*FQNYYDLFYSFEYSFFRVHGRKR 333
           ++T  + + +Q++Y+L YS E    R+H  +R
Sbjct: 332 VNTSIYSTLYQSFYNLIYSLEDQLDRIHNSRR 363


>AF040659-3|AAK39392.1|  919|Caenorhabditis elegans Hypothetical
           protein ZK484.4a protein.
          Length = 919

 Score = 27.1 bits (57), Expect = 5.2
 Identities = 10/31 (32%), Positives = 20/31 (64%)
 Frame = -2

Query: 325 VRERGKRNIRNCKINHNSFEIKIKICTYVFI 233
           +R+R  R  R  + N  ++++KI++C Y+ I
Sbjct: 616 LRDRATRR-RTTRFNDKNYQVKIRLCGYIKI 645


>AF016448-16|AAM45377.1|  394|Caenorhabditis elegans Atg (autophagy)
           related protein18, isoform b protein.
          Length = 394

 Score = 26.6 bits (56), Expect = 6.9
 Identities = 8/40 (20%), Positives = 22/40 (55%)
 Frame = -2

Query: 337 KNVFVRERGKRNIRNCKINHNSFEIKIKICTYVFILNDLK 218
           +N+    R  +++   ++N +   + ++ C Y++ L D+K
Sbjct: 93  RNIICDHRFNKSVLTVRLNRDRIVVCLEDCIYIYNLKDMK 132


>AF016448-15|AAB65961.1|  412|Caenorhabditis elegans Atg (autophagy)
           related protein18, isoform a protein.
          Length = 412

 Score = 26.6 bits (56), Expect = 6.9
 Identities = 8/40 (20%), Positives = 22/40 (55%)
 Frame = -2

Query: 337 KNVFVRERGKRNIRNCKINHNSFEIKIKICTYVFILNDLK 218
           +N+    R  +++   ++N +   + ++ C Y++ L D+K
Sbjct: 93  RNIICDHRFNKSVLTVRLNRDRIVVCLEDCIYIYNLKDMK 132


>AF003389-8|AAC71131.1|  214|Caenorhabditis elegans Hypothetical
           protein F23H11.1 protein.
          Length = 214

 Score = 26.6 bits (56), Expect = 6.9
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = -3

Query: 96  RFIVQNKMSLWCISCDNTSIF 34
           R +V ++   WC SCDN +I+
Sbjct: 140 RELVASRKKQWCWSCDNEAIY 160


>AL021479-1|CAA16321.2|  346|Caenorhabditis elegans Hypothetical
           protein Y22F5A.2 protein.
          Length = 346

 Score = 26.2 bits (55), Expect = 9.1
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = -3

Query: 84  QNKMSLWCISCDNTSIFSSGMTRNKTI 4
           Q   +LWCI   NT IF S + R++ +
Sbjct: 95  QMVFTLWCIGNTNTCIFISLLKRHQVV 121


>AF068721-5|AAC19259.1| 1475|Caenorhabditis elegans Holocentric
           chromosome bindingprotein protein 1 protein.
          Length = 1475

 Score = 26.2 bits (55), Expect = 9.1
 Identities = 10/34 (29%), Positives = 21/34 (61%)
 Frame = -2

Query: 355 KQKLRVKNVFVRERGKRNIRNCKINHNSFEIKIK 254
           K+KL+ + + V+E+   NI+N +   N  E +++
Sbjct: 455 KEKLQAELMVVQEKASENIKNAEEKVNGLEAEVE 488


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,891,007
Number of Sequences: 27780
Number of extensions: 176179
Number of successful extensions: 429
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 424
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 429
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 651753158
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)