Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30983
         (407 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    22   2.3  
DQ855484-1|ABH88171.1|  130|Apis mellifera chemosensory protein ...    21   4.1  
DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GP...    21   4.1  
AJ973401-1|CAJ01448.1|  130|Apis mellifera hypothetical protein ...    21   4.1  
AF481963-1|AAN59784.1|  130|Apis mellifera antennal-specific pro...    21   4.1  
AY569721-1|AAS86674.1|  400|Apis mellifera complementary sex det...    21   7.1  
AF134816-1|AAD40232.1|   50|Apis mellifera unknown protein.            20   9.4  

>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 22.2 bits (45), Expect = 2.3
 Identities = 14/46 (30%), Positives = 22/46 (47%)
 Frame = +1

Query: 163 IVIYLSVYFRNFGKK*NPTSNRSR*IHTYKFLS*FQNYYDLFYSFE 300
           +V+Y+SV+    G K  P S+      TY++   F  Y   F + E
Sbjct: 197 MVMYISVFKAEVGSKLRPRSSFQGPPFTYRYGFSFLLYVSGFITTE 242


>DQ855484-1|ABH88171.1|  130|Apis mellifera chemosensory protein 3
           protein.
          Length = 130

 Score = 21.4 bits (43), Expect = 4.1
 Identities = 6/12 (50%), Positives = 10/12 (83%)
 Frame = -3

Query: 99  VRFIVQNKMSLW 64
           ++F+V+NK  LW
Sbjct: 91  IKFLVENKPELW 102


>DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GPCR
           protein.
          Length = 381

 Score = 21.4 bits (43), Expect = 4.1
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = +2

Query: 2   SIVLFLVIPLLNILVLSHEM 61
           S ++F +IP+L ILV+   M
Sbjct: 216 STIIFFLIPMLIILVVYTRM 235


>AJ973401-1|CAJ01448.1|  130|Apis mellifera hypothetical protein
           protein.
          Length = 130

 Score = 21.4 bits (43), Expect = 4.1
 Identities = 6/12 (50%), Positives = 10/12 (83%)
 Frame = -3

Query: 99  VRFIVQNKMSLW 64
           ++F+V+NK  LW
Sbjct: 91  IKFLVENKPELW 102


>AF481963-1|AAN59784.1|  130|Apis mellifera antennal-specific
           protein 3c precursor protein.
          Length = 130

 Score = 21.4 bits (43), Expect = 4.1
 Identities = 6/12 (50%), Positives = 10/12 (83%)
 Frame = -3

Query: 99  VRFIVQNKMSLW 64
           ++F+V+NK  LW
Sbjct: 91  IKFLVENKPELW 102


>AY569721-1|AAS86674.1|  400|Apis mellifera complementary sex
           determiner protein.
          Length = 400

 Score = 20.6 bits (41), Expect = 7.1
 Identities = 7/20 (35%), Positives = 11/20 (55%)
 Frame = -2

Query: 163 CTFLNSYKNRYKFKTVNQNI 104
           C + N+Y N   +K +  NI
Sbjct: 311 CNYSNNYYNNNNYKKLYYNI 330


>AF134816-1|AAD40232.1|   50|Apis mellifera unknown protein.
          Length = 50

 Score = 20.2 bits (40), Expect = 9.4
 Identities = 5/11 (45%), Positives = 8/11 (72%)
 Frame = -3

Query: 84 QNKMSLWCISC 52
          QN+M +W + C
Sbjct: 17 QNQMMIWALDC 27


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 114,140
Number of Sequences: 438
Number of extensions: 2498
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10256061
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)